Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004147A_C01 KMC004147A_c01
(336 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P14546|COX3_LEITA Cytochrome c oxidase polypeptide III gi|839... 35 0.19
gb|AAA31877.1| cytochrome oxidase 35 0.19
pir||A25877 cytochrome-c oxidase (EC 1.9.3.1) chain III - Crithi... 33 0.72
gb|AAA73419.1| cytochrome C oxidase subunit III 31 4.7
gb|AAA32122.1| cytochrome c oxidase III gi|447158|prf||1913438A ... 30 6.1
>sp|P14546|COX3_LEITA Cytochrome c oxidase polypeptide III gi|83980|pir||G22848
cytochrome-c oxidase (EC 1.9.3.1) chain III - Leishmania
tarentolae mitochondrion
Length = 284
Score = 35.4 bits (80), Expect = 0.19
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = -2
Query: 209 NT*LAVGSTTKRNVLLFLFW---------SLWIRCLYNELVFWNCIWEMILILI 75
NT L S N +LFLFW LW+ L+ L WN +WE L+ +
Sbjct: 149 NTFLLFVSGLFVNFVLFLFWFRFFLCVLFMLWVGILFGFLFLWNQVWEFALLFV 202
>gb|AAA31877.1| cytochrome oxidase
Length = 287
Score = 35.4 bits (80), Expect = 0.19
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = -2
Query: 209 NT*LAVGSTTKRNVLLFLFW---------SLWIRCLYNELVFWNCIWEMILILI 75
NT L S N +LFLFW LW+ L+ L WN +WE L+ +
Sbjct: 152 NTFLLFVSGLFVNFVLFLFWFRFFLCVLFMLWVGILFGFLFLWNQVWEFALLFV 205
>pir||A25877 cytochrome-c oxidase (EC 1.9.3.1) chain III - Crithidia fasciculata
mitochondrion (fragment)
Length = 287
Score = 33.5 bits (75), Expect = 0.72
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Frame = -2
Query: 209 NT*LAVGSTTKRNVLLFLFWS---------LWIRCLYNELVFWNCIWEMILILI 75
NT L S N +LFLFW LW L+ L WN +WE L+ +
Sbjct: 152 NTFLLFVSGLFVNFVLFLFWFRFFLCVLFVLWSAILFGFLFLWNQVWEFALLFV 205
>gb|AAA73419.1| cytochrome C oxidase subunit III
Length = 288
Score = 30.8 bits (68), Expect = 4.7
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Frame = -2
Query: 209 NT*LAVGSTTKRNVLLFLFW---------SLWIRCLYNELVFWNCIWEMILILI 75
NT L S N +LF FW LW L+ L WN +WE L+ +
Sbjct: 153 NTFLLFVSGLFVNFVLFCFWFRLYVCCMFMLWCAILFGFLFMWNQMWEFALLSV 206
>gb|AAA32122.1| cytochrome c oxidase III gi|447158|prf||1913438A cytochrome c
oxidase
Length = 288
Score = 30.4 bits (67), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 146 LWIRCLYNELVFWNCIWEMILILINL 69
LW+ L+ L WN +WE L+ I L
Sbjct: 183 LWLSLLFGFLFLWNQLWEFALLFITL 208
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,461,243
Number of Sequences: 1393205
Number of extensions: 5465202
Number of successful extensions: 12024
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12020
length of database: 448,689,247
effective HSP length: 87
effective length of database: 327,480,412
effective search space used: 7859529888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
