Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004119A_C01 KMC004119A_c01
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180874.1| putative polygalacturonase; protein id: At2g331... 37 0.27
gb|AAF79248.1|AC006917_33 F10B6.9 [Arabidopsis thaliana] 36 0.35
gb|AAM53326.1| unknown protein [Arabidopsis thaliana] 36 0.35
ref|NP_178888.1| putative non-LTR retroelement reverse transcrip... 35 0.60
ref|NP_683675.1| similar to putative non-LTR retroelement revers... 35 0.78
>ref|NP_180874.1| putative polygalacturonase; protein id: At2g33160.1 [Arabidopsis
thaliana] gi|25408248|pir||A84742 probable
polygalacturonase [imported] - Arabidopsis thaliana
gi|2924778|gb|AAC04907.1| putative polygalacturonase
[Arabidopsis thaliana]
Length = 664
Score = 36.6 bits (83), Expect = 0.27
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 520 IAWTLWNLRNMIIFKEGHLDGERVVEIAQLRAWNWLRA 407
I W LWN RN++ F+ H+ E +++AQ+ W A
Sbjct: 446 ILWRLWNSRNILYFQRRHVPWETTLQLAQMDLQEWNEA 483
>gb|AAF79248.1|AC006917_33 F10B6.9 [Arabidopsis thaliana]
Length = 635
Score = 36.2 bits (82), Expect = 0.35
Identities = 33/131 (25%), Positives = 55/131 (41%)
Frame = +3
Query: 84 ITRVQKEKKQSRLTRNMFLQNLLKTKLCTQAPRHNIYTTSTYPRRSSTTRKQYTTKD*TL 263
+TR Q+E+++ R +Q+LL + R +IY + PRRS++ RK T
Sbjct: 510 LTRKQQEEEKRRYRDQKKMQDLLIKR------RESIYGSKPSPRRSNSVRK-------TN 556
Query: 264 WRPTDLKAVSNVRKNSRRVASDNIYKLPMQYLGLTTHSYVENLKSFFFALSQFHALNCAI 443
D R+NS +++I P Y + Y + ++ A F A+
Sbjct: 557 GYNGDASVPPTPRRNSAGATNNDIMTTPRSYSSHRQNGYFKEVRRLSTAPLNFVAIPKED 616
Query: 444 STTRSPSKCPS 476
S + S C S
Sbjct: 617 SVSTYTSVCGS 627
>gb|AAM53326.1| unknown protein [Arabidopsis thaliana]
Length = 603
Score = 36.2 bits (82), Expect = 0.35
Identities = 33/131 (25%), Positives = 55/131 (41%)
Frame = +3
Query: 84 ITRVQKEKKQSRLTRNMFLQNLLKTKLCTQAPRHNIYTTSTYPRRSSTTRKQYTTKD*TL 263
+TR Q+E+++ R +Q+LL + R +IY + PRRS++ RK T
Sbjct: 478 LTRKQQEEEKRRYRDQKKMQDLLIKR------RESIYGSKPSPRRSNSVRK-------TN 524
Query: 264 WRPTDLKAVSNVRKNSRRVASDNIYKLPMQYLGLTTHSYVENLKSFFFALSQFHALNCAI 443
D R+NS +++I P Y + Y + ++ A F A+
Sbjct: 525 GYNGDASVPPTPRRNSAGATNNDIMTTPRSYSSHRQNGYFKEVRRLSTAPLNFVAIPKED 584
Query: 444 STTRSPSKCPS 476
S + S C S
Sbjct: 585 SVSTYTSVCGS 595
>ref|NP_178888.1| putative non-LTR retroelement reverse transcriptase; protein id:
At2g11240.1 [Arabidopsis thaliana]
gi|25411392|pir||B84497 hypothetical protein At2g11240
[imported] - Arabidopsis thaliana
gi|4263655|gb|AAD15377.1| putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
Length = 1044
Score = 35.4 bits (80), Expect = 0.60
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -2
Query: 547 LNSDEVCIAIAWTLWNLRNMIIFKEGHLDGERVVEIAQLRAWNWLRAK 404
+ ++ I I W LWN RN +IF++ H+ ++ + ++ WL A+
Sbjct: 839 IGQGQLPIWILWNLWNCRNKLIFEQKHISSMDLISQSISQSTEWLGAQ 886
>ref|NP_683675.1| similar to putative non-LTR retroelement reverse transcriptase;
protein id: At3g44035.1 [Arabidopsis thaliana]
Length = 673
Score = 35.0 bits (79), Expect = 0.78
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 520 IAWTLWNLRNMIIFKEGHLDGERVVEIAQLRAWNWLRAK 404
I W LWN RN +IF++ H+ ++ + +A WL A+
Sbjct: 464 ILWNLWNCRNKLIFEQKHISSLDLISQSISQAKEWLGAQ 502
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,232,277
Number of Sequences: 1393205
Number of extensions: 11390906
Number of successful extensions: 25207
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 24568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25200
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
