Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004114A_C01 KMC004114A_c01
(459 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_701708.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.097
gb|AAO49077.1| alpha-1,3-galactosyltransferase [Rattus norvegicus] 31 6.9
>ref|NP_701708.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496879|gb|AAN36432.1|AE014849_51 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2026
Score = 37.0 bits (84), Expect = 0.097
Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 8/141 (5%)
Frame = -2
Query: 452 NRNR*NIPVLSHIRDRRRQKHHTE--------NAFSIFPQRLTS*VKLYVIKSVSKLCNK 297
N R N+P + + +R ++K N +++F Q T +KL I+ V +L K
Sbjct: 658 NNERGNMPFILNYFNRVKKKKKANTLESLYILNKYTLFLQPTTDYMKLEDIEHVQRLLEK 717
Query: 296 LVHMNMNPTSW*GGERIDWMV*FVISKWKSSIPLYLNFFLD*KVQSYM*ISDQLDFALCN 117
+ H K K+ I Y+ F D + + +Q D L
Sbjct: 718 VKH-----------------------KEKNKIKQYILFLQD-YCKDEVRKDNQHDHLLVQ 753
Query: 116 HIIEINYYRIHLQLIYLSECG 54
+E+ +Y +H IY+S CG
Sbjct: 754 SPLELKFYELHNYYIYVSRCG 774
>gb|AAO49077.1| alpha-1,3-galactosyltransferase [Rattus norvegicus]
Length = 371
Score = 30.8 bits (68), Expect = 6.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 277 IPRVGEEGRE*IGWFSLSLANGNHPY 200
IP VGE R+ + WFS NG H Y
Sbjct: 40 IPEVGESRRQKVWWFSSWFNNGTHSY 65
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 368,988,656
Number of Sequences: 1393205
Number of extensions: 7095857
Number of successful extensions: 14450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14449
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
