Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004111A_C01 KMC004111A_c01
(824 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182163.1| WRKY family transcription factor; protein id: A... 45 0.001
ref|NP_080755.2| RIKEN cDNA 2410141K03 [Mus musculus] gi|1286068... 37 0.35
emb|CAA65349.1| P-47 [Clostridium botulinum] 35 1.8
ref|XP_244240.1| hypothetical protein XP_244240 [Rattus norvegicus] 33 3.9
ref|NP_596690.1| hypothetical serine-rich secreted protein [Schi... 33 5.1
>ref|NP_182163.1| WRKY family transcription factor; protein id: At2g46400.1,
supported by cDNA: gi_15430276, supported by cDNA:
gi_19423941 [Arabidopsis thaliana]
gi|25408992|pir||D84902 probable WRKY-type DNA binding
protein [imported] - Arabidopsis thaliana
gi|4559382|gb|AAD23042.1| putative WRKY-type DNA binding
protein [Arabidopsis thaliana]
gi|15430277|gb|AAK96020.1| WRKY transcription factor 46
[Arabidopsis thaliana] gi|19423942|gb|AAL87292.1|
putative WRKY-type DNA binding protein [Arabidopsis
thaliana] gi|21436293|gb|AAM51285.1| putative WRKY-type
DNA binding protein [Arabidopsis thaliana]
Length = 295
Score = 45.4 bits (106), Expect = 0.001
Identities = 30/96 (31%), Positives = 52/96 (53%)
Frame = -2
Query: 790 TEQTQERVLSFGSELELKIEDLDYKEDTFPSFCFSSPSIGSEQEDNNIFSENNFIESFSP 611
TEQ+++ + E+ + +EDL+ K++ F +F FS+ I + +N+F NF+E
Sbjct: 193 TEQSEDMKPTKSEEVMISLEDLENKKNIFRTFSFSNHEIENGVWKSNLFL-GNFVED--- 248
Query: 610 PYISPATSELVLHTSDFDVTEIISTPTSVTNYEMID 503
+SPATS + +E++S P +V N E D
Sbjct: 249 --LSPATSGSAI------TSEVLSAPAAVENSETAD 276
>ref|NP_080755.2| RIKEN cDNA 2410141K03 [Mus musculus] gi|12860683|dbj|BAB32021.1|
unnamed protein product [Mus musculus]
gi|19264015|gb|AAH25078.1| RIKEN cDNA 2410141K03 gene
[Mus musculus] gi|26389165|dbj|BAC25690.1| unnamed
protein product [Mus musculus]
Length = 178
Score = 37.0 bits (84), Expect = 0.35
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Frame = +3
Query: 456 IGKT-VSKSMLSRKRSKSIIS*LVTEVGVEIISVTSKSEVCKTSSDVAGDMYGGEKLSMK 632
IG+T + K + +KRSKS+ S + +S+SE +SS D S
Sbjct: 68 IGETNIEKKIKKKKRSKSVTSSSTSSSDSSASESSSESETSASSSSEDSDSDESLSSSSS 127
Query: 633 LFSENMLLSSCSDPIDGEEKQNDGNVSSL*SKSSILSSSSDPKDK 767
S + SS S +D + SS S SS SSS D K
Sbjct: 128 SSSSSACSSSSSSSSSSSSSDSDSSSSSSSSSSSSESSSDDEPQK 172
>emb|CAA65349.1| P-47 [Clostridium botulinum]
Length = 416
Score = 34.7 bits (78), Expect = 1.8
Identities = 25/84 (29%), Positives = 44/84 (51%), Gaps = 5/84 (5%)
Frame = +3
Query: 543 IISVTSKSEVCKTSSDVAGDMYG-----GEKLSMKLFSENMLLSSCSDPIDGEEKQNDGN 707
I+SV + ++ K S++V G++ G G +S KLF +NM+LS S + +N+
Sbjct: 190 ILSVVTNRDISKLSANVDGNILGNNSEVGLLISEKLFLQNMVLSRLSSNMGSNINKNNFE 249
Query: 708 VSSL*SKSSILSSSSDPKDKTLSW 779
V S + + ++S TL+W
Sbjct: 250 VISTSDTTGRIVNNS-----TLNW 268
>ref|XP_244240.1| hypothetical protein XP_244240 [Rattus norvegicus]
Length = 335
Score = 33.5 bits (75), Expect = 3.9
Identities = 13/42 (30%), Positives = 30/42 (70%)
Frame = +2
Query: 374 SDANRYLSITVNLEVGQLISRAKFCGVDWENRVEIHVVKEEI 499
S ANR L + +N+ +G+++ + CGV WE+ V ++++++++
Sbjct: 65 STANRKLKMKMNICLGEIVEIS--CGVPWESNVILYLIEDKV 104
>ref|NP_596690.1| hypothetical serine-rich secreted protein [Schizosaccharomyces
pombe] gi|7493381|pir||T39903 serine-rich protein -
fission yeast (Schizosaccharomyces pombe)
gi|3873550|emb|CAA22127.1| hypothetical serine-rich
secreted protein [Schizosaccharomyces pombe]
Length = 534
Score = 33.1 bits (74), Expect = 5.1
Identities = 24/62 (38%), Positives = 29/62 (46%)
Frame = -2
Query: 688 SSPSIGSEQEDNNIFSENNFIESFSPPYISPATSELVLHTSDFDVTEIISTPTSVTNYEM 509
S PSI SE SE N S Y PATS+L TS F T TP+S + +
Sbjct: 82 SEPSIFSESATP---SETNSYSSPVSSYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSL 138
Query: 508 ID 503
+D
Sbjct: 139 LD 140
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 675,050,576
Number of Sequences: 1393205
Number of extensions: 14503105
Number of successful extensions: 36348
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 34383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36314
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42857050626
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
