Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004096A_C01 KMC004096A_c01
(472 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO45753.1| RING/C3HC4/PHD zinc finger-like protein [Cucumis ... 79 2e-14
dbj|BAC23030.1| ring H2 zinc finger [Solanum tuberosum] 67 7e-11
ref|NP_177365.1| RING-H2 zinc finger protein ATL3, putative; pro... 45 5e-04
dbj|BAA95892.1| EST D47996(S13901)SS3901_1A corresponds to a reg... 44 0.001
gb|AAO42269.1| putative RING-H2 zinc finger protein ATL3 [Arabid... 42 0.003
>gb|AAO45753.1| RING/C3HC4/PHD zinc finger-like protein [Cucumis melo]
Length = 379
Score = 79.3 bits (194), Expect = 2e-14
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 3/68 (4%)
Frame = -2
Query: 471 IILPRETSSRRGYRTGAGEGSSRGKSSRRL---DRGFKSDRWVFTMAPPFLVRASSIRSP 301
++L R++SS RGYR G+GEGSSRGK RRL DR KSDRWV +M PPF R SS+++P
Sbjct: 291 VVLARQSSSMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWVLSMTPPFFTRMSSMKTP 350
Query: 300 RVGNSAGE 277
R G++ E
Sbjct: 351 RGGSNRAE 358
>dbj|BAC23030.1| ring H2 zinc finger [Solanum tuberosum]
Length = 154
Score = 67.4 bits (163), Expect = 7e-11
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Frame = -2
Query: 471 IILPRETSSRRGYRTGAGEGSSRG-KSSRRLDR---GFKSDRWVFTMAPPFLVRASSIRS 304
+ LPR S+ RGYR G GEGS+RG +S +R+DR KSDRW +APPF R SS++S
Sbjct: 47 VTLPRHGSTTRGYRAGPGEGSNRGTRSFKRIDRFDPEAKSDRWFLKIAPPFFTRGSSMKS 106
Query: 303 PRVGNSAGEGTSASTPPPPVARLP 232
P++ E +++ + ++P
Sbjct: 107 PKLRADNEEASTSRSNVKVAVKMP 130
>ref|NP_177365.1| RING-H2 zinc finger protein ATL3, putative; protein id: At1g72200.1
[Arabidopsis thaliana] gi|25406155|pir||E96745
hypothetical protein T9N14.11 [imported] - Arabidopsis
thaliana gi|12323662|gb|AAG51795.1|AC067754_11 RING-H2
zinc finger protein ATL3, putative; 35094-33880
[Arabidopsis thaliana]
Length = 404
Score = 44.7 bits (104), Expect = 5e-04
Identities = 27/72 (37%), Positives = 37/72 (50%)
Frame = -2
Query: 471 IILPRETSSRRGYRTGAGEGSSRGKSSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVG 292
+ LP+ SS RGYRTG+ R D+ + DR F++ PP+ R SSI G
Sbjct: 294 VALPQVMSSTRGYRTGSLGSERNYFYYERFDQDGRLDRRPFSITPPY--RTSSINHMSPG 351
Query: 291 NSAGEGTSASTP 256
S G+ AS+P
Sbjct: 352 GSGGDKVRASSP 363
>dbj|BAA95892.1| EST D47996(S13901)SS3901_1A corresponds to a region of the
predicted gene.~Similar to Zea mays transposon MuDR
mudrA and mudrB genes; mudrA. (M76978) [Oryza sativa
(japonica cultivar-group)]
Length = 509
Score = 43.5 bits (101), Expect = 0.001
Identities = 27/76 (35%), Positives = 39/76 (50%), Gaps = 2/76 (2%)
Frame = -2
Query: 468 ILPRETSSRRGYRTGAGEGSSRGKSSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVGN 289
+LP ++SR GYR GEG+ + R R RW +T++P V S R R+ +
Sbjct: 92 LLPPSSASRHGYRLRTGEGAPEHQIRPREGRIHARQRWNWTLSP---VPRSCRRPNRLDH 148
Query: 288 SAGEGTSASTP--PPP 247
G G + S+P PPP
Sbjct: 149 ERGRGKAPSSPSLPPP 164
>gb|AAO42269.1| putative RING-H2 zinc finger protein ATL3 [Arabidopsis thaliana]
Length = 404
Score = 42.0 bits (97), Expect = 0.003
Identities = 26/72 (36%), Positives = 36/72 (49%)
Frame = -2
Query: 471 IILPRETSSRRGYRTGAGEGSSRGKSSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVG 292
+ LP+ SS RGYRTG+ R + + DR F++ PP+ R SSI G
Sbjct: 294 VALPQVMSSTRGYRTGSLGSERNYFYYERFGQDGRLDRRPFSITPPY--RTSSINHMSPG 351
Query: 291 NSAGEGTSASTP 256
S G+ AS+P
Sbjct: 352 GSGGDKVRASSP 363
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,018,007
Number of Sequences: 1393205
Number of extensions: 10131934
Number of successful extensions: 40254
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 34060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39875
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
