Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004094A_C01 KMC004094A_c01
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567427.1| ankyrin like protein; protein id: At4g14360.1, ... 123 2e-27
pir||E71405 probable ankyrin - Arabidopsis thaliana gi|2244792|e... 123 2e-27
gb|AAK59642.2| unknown protein [Arabidopsis thaliana] 120 1e-26
ref|NP_566725.2| expressed protein; protein id: At3g23300.1 [Ara... 120 1e-26
gb|AAN41290.1| unknown protein [Arabidopsis thaliana] 120 1e-26
>ref|NP_567427.1| ankyrin like protein; protein id: At4g14360.1, supported by cDNA:
gi_16604604, supported by cDNA: gi_20259232 [Arabidopsis
thaliana] gi|16604605|gb|AAL24095.1| putative ankyrin
protein [Arabidopsis thaliana]
gi|20259233|gb|AAM14332.1| putative ankyrin protein
[Arabidopsis thaliana]
Length = 608
Score = 123 bits (309), Expect = 2e-27
Identities = 60/86 (69%), Positives = 70/86 (80%)
Frame = -2
Query: 615 SDLEKEACSPEDLLIEMDRILRPTAFIIIRDRQPVIDFVKKYLTALHWEAVATSDSSSDS 436
SD++K+ CS DLL+EMDRILRP+ FIIIRD+Q V+DFVKKYL ALHWE V T + SDS
Sbjct: 524 SDIKKKGCSEVDLLLEMDRILRPSGFIIIRDKQRVVDFVKKYLKALHWEEVGTK-TDSDS 582
Query: 435 DQDGDEVVFIIQKKLWLTSQSFTDSE 358
DQD D VVFI+QKKLWLTS+S D E
Sbjct: 583 DQDSDNVVFIVQKKLWLTSESLRDME 608
>pir||E71405 probable ankyrin - Arabidopsis thaliana gi|2244792|emb|CAB10215.1|
ankyrin like protein [Arabidopsis thaliana]
gi|7268141|emb|CAB78478.1| ankyrin like protein
[Arabidopsis thaliana]
Length = 936
Score = 123 bits (309), Expect = 2e-27
Identities = 60/86 (69%), Positives = 70/86 (80%)
Frame = -2
Query: 615 SDLEKEACSPEDLLIEMDRILRPTAFIIIRDRQPVIDFVKKYLTALHWEAVATSDSSSDS 436
SD++K+ CS DLL+EMDRILRP+ FIIIRD+Q V+DFVKKYL ALHWE V T + SDS
Sbjct: 852 SDIKKKGCSEVDLLLEMDRILRPSGFIIIRDKQRVVDFVKKYLKALHWEEVGTK-TDSDS 910
Query: 435 DQDGDEVVFIIQKKLWLTSQSFTDSE 358
DQD D VVFI+QKKLWLTS+S D E
Sbjct: 911 DQDSDNVVFIVQKKLWLTSESLRDME 936
>gb|AAK59642.2| unknown protein [Arabidopsis thaliana]
Length = 314
Score = 120 bits (301), Expect = 1e-26
Identities = 57/86 (66%), Positives = 70/86 (81%)
Frame = -2
Query: 615 SDLEKEACSPEDLLIEMDRILRPTAFIIIRDRQPVIDFVKKYLTALHWEAVATSDSSSDS 436
SD++K CS EDLL+EMDRILRP+ FI+IRD+Q V+D VKKYL ALHWEAV T ++S+S
Sbjct: 230 SDIKKRGCSAEDLLLEMDRILRPSGFILIRDKQSVVDLVKKYLKALHWEAVETK-TASES 288
Query: 435 DQDGDEVVFIIQKKLWLTSQSFTDSE 358
DQD D V+ I+QKKLWLTS+S D E
Sbjct: 289 DQDSDNVILIVQKKLWLTSESLRDLE 314
>ref|NP_566725.2| expressed protein; protein id: At3g23300.1 [Arabidopsis thaliana]
gi|11994314|dbj|BAB02273.1| ankyrin-like protein
[Arabidopsis thaliana]
Length = 611
Score = 120 bits (301), Expect = 1e-26
Identities = 57/86 (66%), Positives = 70/86 (81%)
Frame = -2
Query: 615 SDLEKEACSPEDLLIEMDRILRPTAFIIIRDRQPVIDFVKKYLTALHWEAVATSDSSSDS 436
SD++K CS EDLL+EMDRILRP+ FI+IRD+Q V+D VKKYL ALHWEAV T ++S+S
Sbjct: 527 SDIKKRGCSAEDLLLEMDRILRPSGFILIRDKQSVVDLVKKYLKALHWEAVETK-TASES 585
Query: 435 DQDGDEVVFIIQKKLWLTSQSFTDSE 358
DQD D V+ I+QKKLWLTS+S D E
Sbjct: 586 DQDSDNVILIVQKKLWLTSESLRDLE 611
>gb|AAN41290.1| unknown protein [Arabidopsis thaliana]
Length = 376
Score = 120 bits (301), Expect = 1e-26
Identities = 57/86 (66%), Positives = 70/86 (81%)
Frame = -2
Query: 615 SDLEKEACSPEDLLIEMDRILRPTAFIIIRDRQPVIDFVKKYLTALHWEAVATSDSSSDS 436
SD++K CS EDLL+EMDRILRP+ FI+IRD+Q V+D VKKYL ALHWEAV T ++S+S
Sbjct: 292 SDIKKRGCSAEDLLLEMDRILRPSGFILIRDKQSVVDLVKKYLKALHWEAVETK-TASES 350
Query: 435 DQDGDEVVFIIQKKLWLTSQSFTDSE 358
DQD D V+ I+QKKLWLTS+S D E
Sbjct: 351 DQDSDNVILIVQKKLWLTSESLRDLE 376
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,454,703
Number of Sequences: 1393205
Number of extensions: 10207518
Number of successful extensions: 31243
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 26423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30848
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
