Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004093A_C01 KMC004093A_c01
(662 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200263.1| G-protein beta family; protein id: At5g54520.1 ... 163 2e-39
ref|NP_078791.1| hypothetical protein MGC4645 [Homo sapiens] gi|... 102 6e-21
gb|AAH07953.1|AAH07953 Similar to hypothetical protein MGC4645 [... 102 6e-21
ref|XP_234567.1| similar to hypothetical protein MGC4645 [Homo s... 97 1e-19
ref|XP_138261.2| similar to hypothetical protein MGC4645 [Homo s... 97 1e-19
>ref|NP_200263.1| G-protein beta family; protein id: At5g54520.1 [Arabidopsis
thaliana] gi|9758944|dbj|BAB09331.1| contains similarity
to pre-mRNA splicing factor~gene_id:MRB17.2 [Arabidopsis
thaliana]
Length = 404
Score = 163 bits (412), Expect = 2e-39
Identities = 69/102 (67%), Positives = 90/102 (87%)
Frame = -1
Query: 662 AQSNGNYVAIFGTTPPYRLNKYKRYENHGVSGFPIKCNFSRDGKKLASGSSDGSVYLYDY 483
AQS+GNY AIF T PP++LNKYKR+E H V+GFPIKCNFS DG+ LASGSSDGSVY+YDY
Sbjct: 303 AQSHGNYTAIFSTNPPFKLNKYKRFEGHWVAGFPIKCNFSPDGETLASGSSDGSVYMYDY 362
Query: 482 HSSKVVKKIKAFDQACIDVSFHPVIPNVIASCSWDGGILVFE 357
S+ ++KK+KA++Q C++VS+HPV+PNV+A+CSW+G + VFE
Sbjct: 363 KSTALIKKLKAYEQPCVNVSYHPVLPNVVAACSWNGQVSVFE 404
>ref|NP_078791.1| hypothetical protein MGC4645 [Homo sapiens]
gi|13177730|gb|AAH03641.1|AAH03641 Unknown (protein for
MGC:4645) [Homo sapiens]
Length = 287
Score = 102 bits (253), Expect = 6e-21
Identities = 41/101 (40%), Positives = 68/101 (66%)
Frame = -1
Query: 662 AQSNGNYVAIFGTTPPYRLNKYKRYENHGVSGFPIKCNFSRDGKKLASGSSDGSVYLYDY 483
AQ+NGNY+A+F T PYR+++ +RYE H V G+ + C S G L +GS+DG V +Y +
Sbjct: 186 AQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSF 245
Query: 482 HSSKVVKKIKAFDQACIDVSFHPVIPNVIASCSWDGGILVF 360
++ ++ QAC+ ++HPV+P+V+A+CSW G + ++
Sbjct: 246 RTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDMKIW 286
>gb|AAH07953.1|AAH07953 Similar to hypothetical protein MGC4645 [Homo sapiens]
Length = 176
Score = 102 bits (253), Expect = 6e-21
Identities = 41/101 (40%), Positives = 68/101 (66%)
Frame = -1
Query: 662 AQSNGNYVAIFGTTPPYRLNKYKRYENHGVSGFPIKCNFSRDGKKLASGSSDGSVYLYDY 483
AQ+NGNY+A+F T PYR+++ +RYE H V G+ + C S G L +GS+DG V +Y +
Sbjct: 75 AQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSF 134
Query: 482 HSSKVVKKIKAFDQACIDVSFHPVIPNVIASCSWDGGILVF 360
++ ++ QAC+ ++HPV+P+V+A+CSW G + ++
Sbjct: 135 RTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDMKIW 175
>ref|XP_234567.1| similar to hypothetical protein MGC4645 [Homo sapiens] [Rattus
norvegicus]
Length = 263
Score = 97.4 bits (241), Expect = 1e-19
Identities = 39/101 (38%), Positives = 67/101 (65%)
Frame = -1
Query: 662 AQSNGNYVAIFGTTPPYRLNKYKRYENHGVSGFPIKCNFSRDGKKLASGSSDGSVYLYDY 483
AQ+NGNY+A+F + PYR+++ +RYE H V G+ + C S G L +GS+DG V ++ +
Sbjct: 162 AQTNGNYLALFSSVWPYRMSRRRRYEGHKVEGYAVGCECSPCGDLLVTGSADGRVLMFSF 221
Query: 482 HSSKVVKKIKAFDQACIDVSFHPVIPNVIASCSWDGGILVF 360
++ ++ QAC+ ++HPV+P+V+ +CSW G I ++
Sbjct: 222 RTASRACTLQGHTQACLGTTYHPVLPSVLGTCSWGGDIKIW 262
>ref|XP_138261.2| similar to hypothetical protein MGC4645 [Homo sapiens] [Mus
musculus] gi|29243968|ref|NP_808270.1| hypothetical
protein B930090D16 [Mus musculus]
gi|26348997|dbj|BAC38138.1| unnamed protein product [Mus
musculus]
Length = 183
Score = 97.4 bits (241), Expect = 1e-19
Identities = 39/101 (38%), Positives = 67/101 (65%)
Frame = -1
Query: 662 AQSNGNYVAIFGTTPPYRLNKYKRYENHGVSGFPIKCNFSRDGKKLASGSSDGSVYLYDY 483
AQ+NGNY+A+F + PYR+++ +RYE H V G+ + C S G L +GS+DG V ++ +
Sbjct: 82 AQTNGNYLALFSSVWPYRMSRRRRYEGHKVEGYAVGCECSPCGDLLVTGSADGRVLMFSF 141
Query: 482 HSSKVVKKIKAFDQACIDVSFHPVIPNVIASCSWDGGILVF 360
++ ++ QAC+ ++HPV+P+V+ +CSW G I ++
Sbjct: 142 RTASRACTLQGHTQACLGTTYHPVLPSVLGTCSWGGDIKIW 182
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,289,198
Number of Sequences: 1393205
Number of extensions: 12383940
Number of successful extensions: 37636
Number of sequences better than 10.0: 542
Number of HSP's better than 10.0 without gapping: 35303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37566
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
