Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004090A_C01 KMC004090A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196275.1| putative protein; protein id: At5g06570.1 [Arab... 92 5e-18
dbj|BAC20768.1| putative cell death associated protein [Oryza sa... 88 7e-17
dbj|BAB44059.1| P0030H07.24 [Oryza sativa (japonica cultivar-gro... 86 3e-16
dbj|BAC20766.1| putative cell death associated protein [Oryza sa... 81 6e-15
gb|AAO24912.1| putative esterase [Oryza sativa (japonica cultiva... 81 8e-15
>ref|NP_196275.1| putative protein; protein id: At5g06570.1 [Arabidopsis thaliana]
gi|10178113|dbj|BAB11406.1|
gb|AAD04946.2~gene_id:F15M7.10~similar to unknown
protein [Arabidopsis thaliana]
gi|26452184|dbj|BAC43180.1| unknown protein [Arabidopsis
thaliana]
Length = 329
Score = 91.7 bits (226), Expect = 5e-18
Identities = 43/79 (54%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Frame = -3
Query: 517 PFGPDSPNLGELNLEPILVIVGGNELLKDRAADYATRLKEL-GKDIKYIEFEGSEHGFFT 341
PFGP SP L ++LEP+LVIVGG+ELL+DRA +YA +LK++ GK + YIEFE EHGF++
Sbjct: 247 PFGPTSPTLESISLEPMLVIVGGSELLRDRAKEYAYKLKKMGGKRVDYIEFENKEHGFYS 306
Query: 340 HDSYSEVSEEVIQILKQFI 284
+ SE +E+V++I+ F+
Sbjct: 307 NYPSSEAAEQVLRIIGDFM 325
>dbj|BAC20768.1| putative cell death associated protein [Oryza sativa (japonica
cultivar-group)]
Length = 330
Score = 87.8 bits (216), Expect = 7e-17
Identities = 39/78 (50%), Positives = 54/78 (69%)
Frame = -3
Query: 517 PFGPDSPNLGELNLEPILVIVGGNELLKDRAADYATRLKELGKDIKYIEFEGSEHGFFTH 338
PFGP SP+L P LV+VGG +LL+DRA DYA RL +GK ++ +EFEG +HGFFT
Sbjct: 241 PFGPASPDLAAAEFAPTLVVVGGRDLLRDRALDYAARLAAMGKPVEALEFEGQQHGFFTI 300
Query: 337 DSYSEVSEEVIQILKQFI 284
D +S S +++ +K F+
Sbjct: 301 DPWSAASGDLMHAVKLFV 318
>dbj|BAB44059.1| P0030H07.24 [Oryza sativa (japonica cultivar-group)]
Length = 361
Score = 85.9 bits (211), Expect = 3e-16
Identities = 38/78 (48%), Positives = 55/78 (69%)
Frame = -3
Query: 517 PFGPDSPNLGELNLEPILVIVGGNELLKDRAADYATRLKELGKDIKYIEFEGSEHGFFTH 338
PFGP+SP+L + L P LV+ G ++L DR YA RLKE+GK ++ +EFEG++HGF
Sbjct: 275 PFGPESPSLEAVALPPALVVASGGDVLYDRVVGYAARLKEMGKAVELVEFEGAQHGFSVI 334
Query: 337 DSYSEVSEEVIQILKQFI 284
+S + EVIQ+LK+F+
Sbjct: 335 QPWSPETSEVIQVLKRFV 352
>dbj|BAC20766.1| putative cell death associated protein [Oryza sativa (japonica
cultivar-group)]
Length = 348
Score = 81.3 bits (199), Expect = 6e-15
Identities = 36/78 (46%), Positives = 52/78 (66%)
Frame = -3
Query: 517 PFGPDSPNLGELNLEPILVIVGGNELLKDRAADYATRLKELGKDIKYIEFEGSEHGFFTH 338
PFGPDSP + + L P+LV+ GG ++L+DRA DYA RL +GK ++ EF G HGFFT
Sbjct: 263 PFGPDSPAMDGVELPPVLVVAGGLDMLRDRAVDYAERLSAMGKPVELAEFAGEHHGFFTL 322
Query: 337 DSYSEVSEEVIQILKQFI 284
S+ + E+I + +F+
Sbjct: 323 GPGSDAAGELIAAVARFV 340
>gb|AAO24912.1| putative esterase [Oryza sativa (japonica cultivar-group)]
Length = 342
Score = 80.9 bits (198), Expect = 8e-15
Identities = 32/78 (41%), Positives = 54/78 (69%)
Frame = -3
Query: 517 PFGPDSPNLGELNLEPILVIVGGNELLKDRAADYATRLKELGKDIKYIEFEGSEHGFFTH 338
PFGP+SP + + L P+LV+V +LL+DR DYA RL+ +GK ++ +EFEG HGFF
Sbjct: 249 PFGPESPAMDAVALPPLLVVVAQLDLLRDRDVDYAARLRAMGKQVEMVEFEGQHHGFFAV 308
Query: 337 DSYSEVSEEVIQILKQFI 284
+ + E+++++++F+
Sbjct: 309 EPLGDAGSELVRVVRRFV 326
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,828,589
Number of Sequences: 1393205
Number of extensions: 7540286
Number of successful extensions: 19812
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 19260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19798
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
