Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004083A_C01 KMC004083A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_416539.1| O-antigen polymerase [Escherichia coli K12] gi|... 36 0.34
ref|XP_242857.1| hypothetical protein XP_242857 [Rattus norvegicus] 35 0.76
dbj|BAB29833.1| unnamed protein product [Mus musculus] 35 0.76
ref|XP_135902.1| RIKEN cDNA 4930447F04 [Mus musculus] gi|2503035... 35 0.76
dbj|BAB63057.1| hypothetical protein [Macaca fascicularis] 33 2.2
>ref|NP_416539.1| O-antigen polymerase [Escherichia coli K12]
gi|585845|sp|P37748|RFC_ECOLI O-antigen polymerase
gi|2126010|pir||I69644 O-antigen polymerase -
Escherichia coli (strain K-12) gi|508243|gb|AAB88404.1|
O-antigen polymerase [Escherichia coli]
gi|510254|gb|AAC31633.1| O-antigen polymerase
[Escherichia coli] gi|1736725|dbj|BAA15877.1| O-antigen
polymerase. [Escherichia coli]
gi|1736738|dbj|BAA15889.1| O-antigen polymerase.
[Escherichia coli] gi|1788347|gb|AAC75096.1| O-antigen
polymerase [Escherichia coli K12]
Length = 388
Score = 36.2 bits (82), Expect = 0.34
Identities = 21/79 (26%), Positives = 39/79 (48%)
Frame = -3
Query: 248 VTKNCCITKLWREASYGSGIKFYLMYTLFMNSFLYSSSCFYFYSCFAFSLASFFSFCANY 69
V C LWR + + Y+ +F + F+Y+ S +++ F +++S+
Sbjct: 322 VIHGCISGVLWRLS------RNYISVKIFYSYFIYTFSFIFYHESFMTNISSWIQ----- 370
Query: 68 GSINICLVLFSQ*KKTQKI 12
I +C+++FSQ K QKI
Sbjct: 371 --ITLCIIVFSQFLKAQKI 387
>ref|XP_242857.1| hypothetical protein XP_242857 [Rattus norvegicus]
Length = 192
Score = 35.0 bits (79), Expect = 0.76
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = -3
Query: 209 ASYGSGIKFYLMYTLFMNSFLYSS----SCFYFYSCFAF-SLASFFSFCANYGSINIC 51
A Y S FY+ Y F +SS + F Y+ ++F +L + +SFCA Y S + C
Sbjct: 90 APYASSYAFYVSYVPFATYASFSSFASYASFASYASYSFCALYASYSFCATYASYSFC 147
>dbj|BAB29833.1| unnamed protein product [Mus musculus]
Length = 126
Score = 35.0 bits (79), Expect = 0.76
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +2
Query: 47 PNKYLCFHNLHRKKRS*LEKRQSKNKSRSRRKS 145
P Y+C+H L+RK + EKRQ+K + +S+++S
Sbjct: 76 PTIYVCYHMLNRKWKERREKRQNKRRYQSKKRS 108
>ref|XP_135902.1| RIKEN cDNA 4930447F04 [Mus musculus] gi|25030352|ref|XP_204342.1|
RIKEN cDNA 4930447F04 [Mus musculus]
Length = 126
Score = 35.0 bits (79), Expect = 0.76
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +2
Query: 47 PNKYLCFHNLHRKKRS*LEKRQSKNKSRSRRKS 145
P Y+C+H L+RK + EKRQ+K + +S+++S
Sbjct: 76 PTIYVCYHMLNRKWKERREKRQNKRRYQSKKRS 108
>dbj|BAB63057.1| hypothetical protein [Macaca fascicularis]
Length = 707
Score = 33.5 bits (75), Expect = 2.2
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = -2
Query: 204 LWIWN*VLFDVHVIHE*LLILFLLLLLLFLLCLFSS*LLFFLCKLWKHKYL 52
L +W + +H+ H+ +L+LL+ L C+ L+F +CK WK ++L
Sbjct: 134 LLLWEGIELYLHLCHK------ILILLVILPCVI---LMFIICKFWKERWL 175
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,561,693
Number of Sequences: 1393205
Number of extensions: 11650570
Number of successful extensions: 26953
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26641
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
