Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004081A_C01 KMC004081A_c01
(622 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO50999.1| hypothetical protein [Dictyostelium discoideum] 39 0.042
pir||I47141 gastric mucin (clone PGM-2A) - pig (fragment) gi|915... 39 0.055
ref|NP_477842.1| wsv320 [shrimp white spot syndrome virus] gi|17... 38 0.12
gb|AAF66986.1| early growth response protein [Xenopus laevis] 37 0.21
pir||S55316 mucin (clone PGM-2B) - pig gi|915207|gb|AAC48525.1| ... 36 0.46
>gb|AAO50999.1| hypothetical protein [Dictyostelium discoideum]
Length = 895
Score = 39.3 bits (90), Expect = 0.042
Identities = 27/89 (30%), Positives = 41/89 (45%), Gaps = 4/89 (4%)
Frame = +3
Query: 282 KKKLIQTCHRSSEPSVKSQPSTSSWYLNPMRSSSSELGIQPSPNVAPPASPSNHS----R 449
K+K + + SSE S+ P++ S L ++S+ L PSP PP PS S
Sbjct: 689 KRKALNSLSSSSEQSLNLSPTSMSTALTTTTTTSTGLPSPPSPPSPPPPPPSIPSFIINS 748
Query: 450 KSSSFSKPLSLCCTLVPTSSLMLDEATTT 536
K++ + P S T T++ TTT
Sbjct: 749 KTTILTHPTSTTTTTTTTTTTTTTTTTTT 777
>pir||I47141 gastric mucin (clone PGM-2A) - pig (fragment)
gi|915208|gb|AAC48526.1| gastric mucin
Length = 528
Score = 38.9 bits (89), Expect = 0.055
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +3
Query: 324 SVKSQPSTSSWYLNPMRSSSSEL----GIQPSPNVAPPASPSNHSRKSSSFSKPLSLCCT 491
S S P+TS+ + P SSS+ + +QPS + + P + + + SSS S P+S +
Sbjct: 248 SSSSAPTTSATSVQPSSSSSTPIPSTTSVQPSSSSSAPTTSATSVQPSSSSSPPISSTIS 307
Query: 492 LVPTSSLMLDEATTTKL 542
+ P+SS +TT +
Sbjct: 308 VQPSSSSSSPTTSTTSV 324
Score = 37.7 bits (86), Expect = 0.12
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +3
Query: 324 SVKSQPSTSSWYLNPMRSSS----SELGIQPSPNVAPPASPSNHSRKSSSFSKPLSLCCT 491
S S P+TS+ + P SSS S + +QPS + + P + + + SSS S P+S +
Sbjct: 136 SSSSAPTTSATSVQPSSSSSPPISSTVSVQPSSSSSAPTTSATSVQPSSSSSPPISSTVS 195
Query: 492 LVPTSSLMLDEATTTKL 542
+ +SS + +TT +
Sbjct: 196 VQTSSSSSVPTTSTTSV 212
Score = 37.4 bits (85), Expect = 0.16
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Frame = +3
Query: 300 TCHRSSEPSVKSQPSTSSWY-LNPMRSSSSEL----GIQPSPNVAPPASPSNHSRKSSSF 464
T S +PS S P SS + P SSSS +QPS + + P + + + SSS
Sbjct: 287 TSATSVQPSSSSSPPISSTISVQPSSSSSSPTTSTTSVQPSSSGSAPTTSATSVQPSSSS 346
Query: 465 SKPLSLCCTLVPTSSLMLDEATTTKL 542
S P+S ++ P+SS +TT +
Sbjct: 347 SPPISSTISVQPSSSSSSPTTSTTSV 372
Score = 37.0 bits (84), Expect = 0.21
Identities = 23/77 (29%), Positives = 38/77 (48%), Gaps = 4/77 (5%)
Frame = +3
Query: 324 SVKSQPSTSSWYLNPMRSSS----SELGIQPSPNVAPPASPSNHSRKSSSFSKPLSLCCT 491
S S P+TS+ + P S S S +QPS + + P + + R SSS S P+ +
Sbjct: 360 SSSSSPTTSTTSVQPSSSGSAPTTSATSVQPSSSSSVPTTSATSVRSSSSSSTPIPTTTS 419
Query: 492 LVPTSSLMLDEATTTKL 542
+ P+SS + + T +
Sbjct: 420 VQPSSSSSVPTTSATSV 436
Score = 37.0 bits (84), Expect = 0.21
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Frame = +3
Query: 294 IQTCHRSSEP----------SVKSQPSTSSWYLNPMRSSS----SELGIQPSPNVAPPAS 431
+QT SS P S S P+TS+ + P SSS S + +QPS + + P +
Sbjct: 436 VQTSSSSSTPIPSTTSVQPSSSSSAPTTSATSVQPSSSSSPPISSTISVQPSSSSSSPTT 495
Query: 432 PSNHSRKSSSFSKPLSLCCTLVPTSS 509
+ + SSS S P + ++ P+SS
Sbjct: 496 STTSVQPSSSGSAPTTSATSVQPSSS 521
Score = 37.0 bits (84), Expect = 0.21
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Frame = +3
Query: 300 TCHRSSEPSVKSQPSTSSWY-LNPMRSSS----SELGIQPSPNVAPPASPSNHSRKSSSF 464
T S +PS S P SS + P SSS S +QPS + +PP S + + SSS
Sbjct: 143 TSATSVQPSSSSSPPISSTVSVQPSSSSSAPTTSATSVQPSSSSSPPISSTVSVQTSSSS 202
Query: 465 SKPLSLCCTLVPTSSLMLDEATTTKL 542
S P + ++ P+SS + + T +
Sbjct: 203 SVPTTSTTSVQPSSSSSVPTTSATSV 228
Score = 37.0 bits (84), Expect = 0.21
Identities = 26/86 (30%), Positives = 44/86 (50%), Gaps = 5/86 (5%)
Frame = +3
Query: 300 TCHRSSEPSVK-SQPSTSSWYLNPMRSSS----SELGIQPSPNVAPPASPSNHSRKSSSF 464
T S +PS S P+TS+ + P SSS S + +QPS + + P + + + SSS
Sbjct: 319 TSTTSVQPSSSGSAPTTSATSVQPSSSSSPPISSTISVQPSSSSSSPTTSTTSVQPSSSG 378
Query: 465 SKPLSLCCTLVPTSSLMLDEATTTKL 542
S P + ++ P+SS + + T +
Sbjct: 379 SAPTTSATSVQPSSSSSVPTTSATSV 404
Score = 36.6 bits (83), Expect = 0.27
Identities = 23/66 (34%), Positives = 35/66 (52%), Gaps = 4/66 (6%)
Frame = +3
Query: 324 SVKSQPSTSSWYLNPMRSSS----SELGIQPSPNVAPPASPSNHSRKSSSFSKPLSLCCT 491
S S P+TS+ + P S S S +QPS + +PP S + + SSS S P + +
Sbjct: 312 SSSSSPTTSTTSVQPSSSGSAPTTSATSVQPSSSSSPPISSTISVQPSSSSSSPTTSTTS 371
Query: 492 LVPTSS 509
+ P+SS
Sbjct: 372 VQPSSS 377
Score = 35.8 bits (81), Expect = 0.46
Identities = 25/82 (30%), Positives = 43/82 (51%), Gaps = 5/82 (6%)
Frame = +3
Query: 312 SSEPSVKSQ-PSTSSWYLNPMRSSSSEL----GIQPSPNVAPPASPSNHSRKSSSFSKPL 476
S +PS S P+TS+ + SSS+ + +QPS + + P + + + SSS S P+
Sbjct: 419 SVQPSSSSSVPTTSATSVQTSSSSSTPIPSTTSVQPSSSSSAPTTSATSVQPSSSSSPPI 478
Query: 477 SLCCTLVPTSSLMLDEATTTKL 542
S ++ P+SS +TT +
Sbjct: 479 SSTISVQPSSSSSSPTTSTTSV 500
Score = 35.0 bits (79), Expect = 0.79
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Frame = +3
Query: 300 TCHRSSEPSVKSQ---PSTSSWYLNPMRSSS----SELGIQPSPNVAPPASPSNHSRKSS 458
T S +PS S PST+S + P SSS S +QPS + +PP S + + SS
Sbjct: 255 TSATSVQPSSSSSTPIPSTTS--VQPSSSSSAPTTSATSVQPSSSSSPPISSTISVQPSS 312
Query: 459 SFSKPLSLCCTLVPTSS 509
S S P + ++ P+SS
Sbjct: 313 SSSSPTTSTTSVQPSSS 329
Score = 34.7 bits (78), Expect = 1.0
Identities = 26/86 (30%), Positives = 38/86 (43%), Gaps = 5/86 (5%)
Frame = +3
Query: 300 TCHRSSEPSVKSQPSTSSWYLNPMRSSSS-----ELGIQPSPNVAPPASPSNHSRKSSSF 464
T S +PS S P SS SSSS +QPS + + P + + R SSS
Sbjct: 175 TSATSVQPSSSSSPPISSTVSVQTSSSSSVPTTSTTSVQPSSSSSVPTTSATSVRSSSSS 234
Query: 465 SKPLSLCCTLVPTSSLMLDEATTTKL 542
S P+ ++ P+SS + T +
Sbjct: 235 STPIPSTTSVQPSSSSSAPTTSATSV 260
Score = 33.9 bits (76), Expect = 1.8
Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 324 SVKSQPSTSSWYLNPMRSSS----SELGIQPSPNVAPPASPSNHSRKSSSFSKPLSLCCT 491
S S P+TS+ + SSS S +QPS + + P + + + SSS S P+S +
Sbjct: 8 SSSSSPTTSTTSVQSSSSSSVPIPSTTSVQPSSSGSAPTTSATSVQTSSSSSPPISSTIS 67
Query: 492 LVPTSSLMLDEATTTKL 542
+ +SS + +TT +
Sbjct: 68 VQTSSSSSVPTTSTTSV 84
Score = 33.1 bits (74), Expect = 3.0
Identities = 28/97 (28%), Positives = 45/97 (45%), Gaps = 14/97 (14%)
Frame = +3
Query: 294 IQTCHRSSEPSVKS---QPSTSSWY----LNPMRSSSSE-------LGIQPSPNVAPPAS 431
+QT SS P+ + QPS+SS +RSSSS +QPS + + P +
Sbjct: 196 VQTSSSSSVPTTSTTSVQPSSSSSVPTTSATSVRSSSSSSTPIPSTTSVQPSSSSSAPTT 255
Query: 432 PSNHSRKSSSFSKPLSLCCTLVPTSSLMLDEATTTKL 542
+ + SSS S P+ ++ P+SS + T +
Sbjct: 256 SATSVQPSSSSSTPIPSTTSVQPSSSSSAPTTSATSV 292
Score = 33.1 bits (74), Expect = 3.0
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +3
Query: 294 IQTCHRSSEP---SVKSQPSTSSWYLNPMRSSSSELGIQPSPNVAPPASPSNHSRKSSSF 464
+QT SS P ++ Q S+SS P S++S +QPS + + P + + + SSS
Sbjct: 52 VQTSSSSSPPISSTISVQTSSSSSV--PTTSTTS---VQPSSSSSAPTTRATSVQSSSSS 106
Query: 465 SKPLSLCCTLVPTSSLMLDEATTTKL 542
S P+S ++ P+SS + + T +
Sbjct: 107 SAPISSTTSVQPSSSGSVPTTSATSV 132
>ref|NP_477842.1| wsv320 [shrimp white spot syndrome virus]
gi|17016716|gb|AAL33322.1| wsv320 [shrimp white spot
syndrome virus] gi|19481968|gb|AAL89244.1| WSSV376
[shrimp white spot syndrome virus]
Length = 138
Score = 37.7 bits (86), Expect = 0.12
Identities = 26/56 (46%), Positives = 31/56 (54%)
Frame = +3
Query: 312 SSEPSVKSQPSTSSWYLNPMRSSSSELGIQPSPNVAPPASPSNHSRKSSSFSKPLS 479
SS PS PS SS Y +P SSSS P+ +PP+SPS+ S SSS S S
Sbjct: 55 SSSPS----PSLSSSYSSPSSSSSSRF-----PSYSPPSSPSSSSSSSSSSSSSSS 101
>gb|AAF66986.1| early growth response protein [Xenopus laevis]
Length = 497
Score = 37.0 bits (84), Expect = 0.21
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Frame = +3
Query: 282 KKKLIQTCHRSSEPSVKSQPSTSSWYLNPMRSSSSELGIQP--------------SPNVA 419
+K L+++ + + + S T + L P +SS+ L +P SP+ A
Sbjct: 84 EKALVESSYANQTTRLPSLTYTGRFSLEPATNSSNTLWPEPLFSLVSGLVGMANISPSSA 143
Query: 420 PPASPSNHSRKSSSFSKPLSLCCTLVPTSSLMLDEATTT 536
P +SPS+ S SSS S PLS C++ S + A T
Sbjct: 144 PSSSPSSSSSSSSSQSPPLS--CSVQSNDSSPIYSAAPT 180
>pir||S55316 mucin (clone PGM-2B) - pig gi|915207|gb|AAC48525.1| gastric mucin
Length = 317
Score = 35.8 bits (81), Expect = 0.46
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +3
Query: 333 SQPSTSSWYLNPMRSSS----SELGIQPSPNVAPPASPSNHSRKSSSFSKPLSLCCTLVP 500
S P+TS+ + P SSS S + +QPS + + P + + + SSS S P + ++ P
Sbjct: 153 SAPTTSATSVQPSSSSSPPISSTISVQPSSSSSAPTTSATSVQSSSSSSAPTTSATSVQP 212
Query: 501 TSS 509
+SS
Sbjct: 213 SSS 215
Score = 35.4 bits (80), Expect = 0.60
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +3
Query: 333 SQPSTSSWYLNPMRSSS----SELGIQPSPNVAPPASPSNHSRKSSSFSKPLSLCCTLVP 500
S P+TS+ + P SSS S + +QPS + + P + + + SSS S P + ++ P
Sbjct: 105 SAPTTSATSVQPSSSSSPPISSTISVQPSSSSSAPTTSATSVQSSSSGSAPTTSATSVQP 164
Query: 501 TSS 509
+SS
Sbjct: 165 SSS 167
Score = 33.9 bits (76), Expect = 1.8
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 312 SSEPSVKSQPS--TSSWYLNPMRSSSSELGIQPSPNVAPPASPSNHSRKSSSFSKPLSLC 485
SS P + S S TSS +P S++S +QPS + + P + + + SSS S P+S
Sbjct: 231 SSSPPISSTISVQTSSSSSSPTTSTTS---VQPSSSGSAPTTSATSVQPSSSSSPPISST 287
Query: 486 CTLVPTSSLMLDEATTTKL 542
++ P+SS + T +
Sbjct: 288 ISVQPSSSSSAPTTSATSV 306
Score = 33.5 bits (75), Expect = 2.3
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +3
Query: 324 SVKSQPSTSSWYLNPMRSSS----SELGIQPSPNVAPPASPSNHSRKSSSFSKPLSLCCT 491
S S P+TS+ + P S S S +QPS + +PP S + + SSS S P + +
Sbjct: 246 SSSSSPTTSTTSVQPSSSGSAPTTSATSVQPSSSSSPPISSTISVQPSSSSSAPTTSATS 305
Query: 492 LVPTSS 509
+ +SS
Sbjct: 306 VQSSSS 311
Score = 33.1 bits (74), Expect = 3.0
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +3
Query: 324 SVKSQPSTSSWYLNPMRSSS----SELGIQPSPNVAPPASPSNHSRKSSSFSKPLSLCCT 491
S S P+TS+ + P S S S +Q S + +PP S + + SSS S P + +
Sbjct: 198 SSSSAPTTSATSVQPSSSGSAPTTSATSVQSSSSSSPPISSTISVQTSSSSSSPTTSTTS 257
Query: 492 LVPTSS 509
+ P+SS
Sbjct: 258 VQPSSS 263
Score = 32.7 bits (73), Expect = 3.9
Identities = 23/77 (29%), Positives = 38/77 (48%), Gaps = 4/77 (5%)
Frame = +3
Query: 324 SVKSQPSTSSWYLNPMRSSS----SELGIQPSPNVAPPASPSNHSRKSSSFSKPLSLCCT 491
S S P+TS+ + SSS S +QPS + + P + + + SSS S P+S +
Sbjct: 182 SSSSAPTTSATSVQSSSSSSAPTTSATSVQPSSSGSAPTTSATSVQSSSSSSPPISSTIS 241
Query: 492 LVPTSSLMLDEATTTKL 542
+ +SS +TT +
Sbjct: 242 VQTSSSSSSPTTSTTSV 258
Score = 32.7 bits (73), Expect = 3.9
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Frame = +3
Query: 294 IQTCHRSSEPSVK----------SQPSTSSWYLNPMRSSS----SELGIQPSPNVAPPAS 431
+QT SS P+ S P+TS+ + P SSS S + +QPS + + P +
Sbjct: 242 VQTSSSSSSPTTSTTSVQPSSSGSAPTTSATSVQPSSSSSPPISSTISVQPSSSSSAPTT 301
Query: 432 PSNHSRKSSSFSKP 473
+ + SSS S P
Sbjct: 302 SATSVQSSSSSSAP 315
Score = 32.3 bits (72), Expect = 5.1
Identities = 22/77 (28%), Positives = 37/77 (47%), Gaps = 4/77 (5%)
Frame = +3
Query: 324 SVKSQPSTSSWYLNPMRSSS----SELGIQPSPNVAPPASPSNHSRKSSSFSKPLSLCCT 491
S S P+TS+ + P S S S +Q S + + P + + + SSS S P+S +
Sbjct: 70 SSSSAPTTSATSVQPSSSGSAPTTSATSVQSSSSGSAPTTSATSVQPSSSSSPPISSTIS 129
Query: 492 LVPTSSLMLDEATTTKL 542
+ P+SS + T +
Sbjct: 130 VQPSSSSSAPTTSATSV 146
Score = 31.6 bits (70), Expect = 8.7
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = +3
Query: 312 SSEPSVKSQPSTSSWY-LNPMRSSS----SELGIQPSPNVAPPASPSNHSRKSSSFSKPL 476
+S P S +TSS + P SSS S +QPS + + P + + + SSS S P
Sbjct: 49 TSPPETSSHGATSSTTSVQPSSSSSAPTTSATSVQPSSSGSAPTTSATSVQSSSSGSAPT 108
Query: 477 SLCCTLVPTSS 509
+ ++ P+SS
Sbjct: 109 TSATSVQPSSS 119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,666,941
Number of Sequences: 1393205
Number of extensions: 11913777
Number of successful extensions: 44483
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 39376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43401
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
