Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004075A_C01 KMC004075A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK92793.1| unknown protein [Arabidopsis thaliana] 129 3e-44
ref|NP_564594.1| expressed protein; protein id: At1g51610.1, sup... 129 3e-44
pir||G96554 hypothetical protein F19C24.16 [imported] - Arabidop... 124 1e-42
ref|NP_006336.2| chromosome 4 open reading frame 1; expressed in... 48 2e-11
gb|AAH22981.1| Similar to chromosome 4 open reading frame 1 [Hom... 48 2e-11
>gb|AAK92793.1| unknown protein [Arabidopsis thaliana]
Length = 457
Score = 129 bits (323), Expect(2) = 3e-44
Identities = 60/71 (84%), Positives = 65/71 (91%)
Frame = -2
Query: 496 KNDPVVDSLYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREEWAKQFREASKEGD 317
+ND VVDSLYDCKSEVIGPG FRFKAEIDFNG MVVQNYLKRTGREEWAK FREA+K GD
Sbjct: 344 RNDSVVDSLYDCKSEVIGPGSFRFKAEIDFNGQMVVQNYLKRTGREEWAKMFREAAKNGD 403
Query: 316 DTALMRIMSNY 284
D+A++ IMSNY
Sbjct: 404 DSAMLNIMSNY 414
Score = 70.9 bits (172), Expect(2) = 3e-44
Identities = 34/37 (91%), Positives = 35/37 (93%)
Frame = -3
Query: 267 GEEVVTALGSEVDRLETEIQNLVPGIRHVDIEAHNPT 157
GEEVVTALGSEVDRLE EIQ LVPGI+HVDIEAHNPT
Sbjct: 415 GEEVVTALGSEVDRLEKEIQGLVPGIQHVDIEAHNPT 451
>ref|NP_564594.1| expressed protein; protein id: At1g51610.1, supported by cDNA:
gi_15292844 [Arabidopsis thaliana]
gi|23297266|gb|AAN12928.1| unknown protein [Arabidopsis
thaliana]
Length = 457
Score = 129 bits (323), Expect(2) = 3e-44
Identities = 60/71 (84%), Positives = 65/71 (91%)
Frame = -2
Query: 496 KNDPVVDSLYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREEWAKQFREASKEGD 317
+ND VVDSLYDCKSEVIGPG FRFKAEIDFNG MVVQNYLKRTGREEWAK FREA+K GD
Sbjct: 344 RNDSVVDSLYDCKSEVIGPGSFRFKAEIDFNGQMVVQNYLKRTGREEWAKMFREAAKNGD 403
Query: 316 DTALMRIMSNY 284
D+A++ IMSNY
Sbjct: 404 DSAMLNIMSNY 414
Score = 70.9 bits (172), Expect(2) = 3e-44
Identities = 34/37 (91%), Positives = 35/37 (93%)
Frame = -3
Query: 267 GEEVVTALGSEVDRLETEIQNLVPGIRHVDIEAHNPT 157
GEEVVTALGSEVDRLE EIQ LVPGI+HVDIEAHNPT
Sbjct: 415 GEEVVTALGSEVDRLEKEIQELVPGIQHVDIEAHNPT 451
>pir||G96554 hypothetical protein F19C24.16 [imported] - Arabidopsis thaliana
gi|12321668|gb|AAG50870.1|AC025294_8 hypothetical
protein [Arabidopsis thaliana]
gi|12325358|gb|AAG52617.1|AC024261_4 unknown protein;
4121-1125 [Arabidopsis thaliana]
Length = 423
Score = 124 bits (310), Expect(2) = 1e-42
Identities = 58/67 (86%), Positives = 62/67 (91%)
Frame = -2
Query: 484 VVDSLYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREEWAKQFREASKEGDDTAL 305
VVDSLYDCKSEVIGPG FRFKAEIDFNG MVVQNYLKRTGREEWAK FREA+K GDD+A+
Sbjct: 314 VVDSLYDCKSEVIGPGSFRFKAEIDFNGQMVVQNYLKRTGREEWAKMFREAAKNGDDSAM 373
Query: 304 MRIMSNY 284
+ IMSNY
Sbjct: 374 LNIMSNY 380
Score = 70.9 bits (172), Expect(2) = 1e-42
Identities = 34/37 (91%), Positives = 35/37 (93%)
Frame = -3
Query: 267 GEEVVTALGSEVDRLETEIQNLVPGIRHVDIEAHNPT 157
GEEVVTALGSEVDRLE EIQ LVPGI+HVDIEAHNPT
Sbjct: 381 GEEVVTALGSEVDRLEKEIQELVPGIQHVDIEAHNPT 417
>ref|NP_006336.2| chromosome 4 open reading frame 1; expressed in human embryonic
lung [Homo sapiens] gi|7629277|gb|AAB87763.2| embryonic
lung protein [Homo sapiens]
gi|14043490|gb|AAH07732.1|AAH07732 chromosome 4 open
reading frame 1 [Homo sapiens]
gi|16877404|gb|AAH16949.1|AAH16949 chromosome 4 open
reading frame 1 [Homo sapiens]
Length = 568
Score = 47.8 bits (112), Expect(2) = 2e-11
Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Frame = -2
Query: 496 KNDPVVDSLYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREEWAKQFREA-SKEG 320
+NDP V +++D K+ +G G RFKAE+DF+G +V ++YL++ ++ ++ +E + E
Sbjct: 467 ENDPSVRAIHDVKATDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEE 526
Query: 319 DDTALMRIMSNYVLSYG 269
+T +++ N + + G
Sbjct: 527 LETFMLKHGENIIDTLG 543
Score = 41.6 bits (96), Expect(2) = 2e-11
Identities = 17/32 (53%), Positives = 24/32 (74%)
Frame = -3
Query: 267 GEEVVTALGSEVDRLETEIQNLVPGIRHVDIE 172
GE ++ LG+EVDRLE E++ P +RHVD+E
Sbjct: 535 GENIIDTLGAEVDRLEKELKKRNPEVRHVDLE 566
>gb|AAH22981.1| Similar to chromosome 4 open reading frame 1 [Homo sapiens]
Length = 413
Score = 47.8 bits (112), Expect(2) = 2e-11
Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Frame = -2
Query: 496 KNDPVVDSLYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREEWAKQFREA-SKEG 320
+NDP V +++D K+ +G G RFKAE+DF+G +V ++YL++ ++ ++ +E + E
Sbjct: 312 ENDPSVRAIHDVKATDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEE 371
Query: 319 DDTALMRIMSNYVLSYG 269
+T +++ N + + G
Sbjct: 372 LETFMLKHGENIIDTLG 388
Score = 41.6 bits (96), Expect(2) = 2e-11
Identities = 17/32 (53%), Positives = 24/32 (74%)
Frame = -3
Query: 267 GEEVVTALGSEVDRLETEIQNLVPGIRHVDIE 172
GE ++ LG+EVDRLE E++ P +RHVD+E
Sbjct: 380 GENIIDTLGAEVDRLEKELKKRNPEVRHVDLE 411
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,835,589
Number of Sequences: 1393205
Number of extensions: 7535273
Number of successful extensions: 16159
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16154
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
