Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004072A_C03 KMC004072A_c03
(864 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA97428.1| ATPase 6 36 0.85
ref|NP_704422.1| hypothetical protein [Plasmodium falciparum 3D7... 35 1.1
ref|NP_702839.1| hypothetical protein [Plasmodium falciparum 3D7... 35 1.1
dbj|BAB02772.1| gene_id:MDB19.2~unknown protein [Arabidopsis tha... 34 2.5
ref|NP_188996.1| unknown protein; protein id: At3g23540.1 [Arabi... 34 2.5
>gb|AAA97428.1| ATPase 6
Length = 231
Score = 35.8 bits (81), Expect = 0.85
Identities = 33/116 (28%), Positives = 50/116 (42%)
Frame = -1
Query: 411 CQFGRHCLFLGYWCYNRVSLVIDGSDHFPTFCLFDVL*LFESQCSS*ALFLLGLCDVFHT 232
C + R C F+ Y +N + L+ D F FCLFD+ LF C LFLL
Sbjct: 21 CVWSRLC-FIVY--FNCLMLIFD----FLLFCLFDLY-LFVGLC----LFLL-------- 60
Query: 231 LGPPIYALARRF*VFIRRVKVLGLTL*HCELFTRCVLICTINFILYYIYIYIFCFL 64
++ + L L +C + L+ I F+LY ++++FCFL
Sbjct: 61 -------------LWFMLFNLYSLILYYCITYLNLYLLFCIVFLLYIAFLFLFCFL 103
>ref|NP_704422.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499161|emb|CAD51241.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 132
Score = 35.4 bits (80), Expect = 1.1
Identities = 16/26 (61%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = -3
Query: 121 YLYYQLYIILYIYIYI-LFSKKKKKK 47
Y+Y +YI +YIYIYI L+ KK+KKK
Sbjct: 11 YIYMYIYIYIYIYIYICLWEKKEKKK 36
>ref|NP_702839.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498255|emb|CAD49226.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 455
Score = 35.4 bits (80), Expect = 1.1
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 142 TIHTLCAYLYYQLYIILYIYIYI 74
T H +C Y+Y +YI +YIYIYI
Sbjct: 410 TYHHVCIYIYIYIYIYIYIYIYI 432
>dbj|BAB02772.1| gene_id:MDB19.2~unknown protein [Arabidopsis thaliana]
Length = 599
Score = 34.3 bits (77), Expect = 2.5
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +1
Query: 208 KSIYRGTKGVKNVTQTQQK*SSTRALG----LK*SQYIKQTESRKVITAIYNQRDPVIAP 375
K++ K ++ +Q +++ TR G L Q I E A ++ D +P
Sbjct: 458 KAVMESLKDLEVQSQQKKEPPETRIHGGSAFLNAVQCISSREESTSTRANQSETDSASSP 517
Query: 376 ITQKQAMTPKLTSSSTNPPHSRTHNLTRKGTRKDPG 483
+T+ Q P +SS +NPP + +L R T PG
Sbjct: 518 VTRSQDQLP--SSSESNPPSETSSSLARTVTSSVPG 551
>ref|NP_188996.1| unknown protein; protein id: At3g23540.1 [Arabidopsis thaliana]
Length = 568
Score = 34.3 bits (77), Expect = 2.5
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +1
Query: 208 KSIYRGTKGVKNVTQTQQK*SSTRALG----LK*SQYIKQTESRKVITAIYNQRDPVIAP 375
K++ K ++ +Q +++ TR G L Q I E A ++ D +P
Sbjct: 427 KAVMESLKDLEVQSQQKKEPPETRIHGGSAFLNAVQCISSREESTSTRANQSETDSASSP 486
Query: 376 ITQKQAMTPKLTSSSTNPPHSRTHNLTRKGTRKDPG 483
+T+ Q P +SS +NPP + +L R T PG
Sbjct: 487 VTRSQDQLP--SSSESNPPSETSSSLARTVTSSVPG 520
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 798,273,653
Number of Sequences: 1393205
Number of extensions: 19360631
Number of successful extensions: 66417
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 58464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65408
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45988509105
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
