Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004071A_C01 KMC004071A_c01
(701 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564000.1| unknown protein; protein id: At1g16520.1 [Arabi... 106 4e-22
gb|AAD34703.1|AC006341_31 ESTs gb|N38586 and gb|N38613 come from... 106 4e-22
ref|NP_567470.1| Expressed protein; protein id: At4g15545.1, sup... 90 3e-17
ref|NP_176004.1| hypothetical protein; protein id: At1g56080.1 [... 87 2e-16
ref|NP_704684.1| hypothetical protein, conserved [Plasmodium fal... 66 4e-10
>ref|NP_564000.1| unknown protein; protein id: At1g16520.1 [Arabidopsis thaliana]
Length = 323
Score = 106 bits (264), Expect = 4e-22
Identities = 52/56 (92%), Positives = 55/56 (97%)
Frame = -3
Query: 699 SRLSYEQFSAFLANIKELNAQKQTREETLRKADEIFGSDNKDLYLSFQGLLNRNVR 532
SRLSYEQFS+FLANIKELNAQKQTREETLRKADEIFG +NKDLYLSFQGLLNRN+R
Sbjct: 268 SRLSYEQFSSFLANIKELNAQKQTREETLRKADEIFGEENKDLYLSFQGLLNRNMR 323
>gb|AAD34703.1|AC006341_31 ESTs gb|N38586 and gb|N38613 come from this gene. [Arabidopsis
thaliana] gi|26452357|dbj|BAC43264.1| unknown protein
[Arabidopsis thaliana]
Length = 325
Score = 106 bits (264), Expect = 4e-22
Identities = 52/56 (92%), Positives = 55/56 (97%)
Frame = -3
Query: 699 SRLSYEQFSAFLANIKELNAQKQTREETLRKADEIFGSDNKDLYLSFQGLLNRNVR 532
SRLSYEQFS+FLANIKELNAQKQTREETLRKADEIFG +NKDLYLSFQGLLNRN+R
Sbjct: 270 SRLSYEQFSSFLANIKELNAQKQTREETLRKADEIFGEENKDLYLSFQGLLNRNMR 325
>ref|NP_567470.1| Expressed protein; protein id: At4g15545.1, supported by cDNA:
307., supported by cDNA: gi_14517355, supported by cDNA:
gi_15982812, supported by cDNA: gi_16323275 [Arabidopsis
thaliana] gi|14517356|gb|AAK62569.1| AT4g15540/dl3810w
[Arabidopsis thaliana] gi|15982813|gb|AAL09754.1|
AT4g15540/dl3810w [Arabidopsis thaliana]
gi|16323276|gb|AAL15372.1| AT4g15540/dl3810w
[Arabidopsis thaliana] gi|21592639|gb|AAM64588.1|
unknown [Arabidopsis thaliana]
gi|22531186|gb|AAM97097.1| expressed protein
[Arabidopsis thaliana] gi|23198008|gb|AAN15531.1|
expressed protein [Arabidopsis thaliana]
Length = 337
Score = 89.7 bits (221), Expect = 3e-17
Identities = 41/54 (75%), Positives = 48/54 (87%)
Frame = -3
Query: 699 SRLSYEQFSAFLANIKELNAQKQTREETLRKADEIFGSDNKDLYLSFQGLLNRN 538
SRLSYEQF AFL N+K+LNA KQTREETLRKA+EIFG DN+DLY+ F+GL+ RN
Sbjct: 282 SRLSYEQFGAFLGNVKDLNAHKQTREETLRKAEEIFGGDNRDLYVIFEGLITRN 335
>ref|NP_176004.1| hypothetical protein; protein id: At1g56080.1 [Arabidopsis
thaliana]
Length = 327
Score = 87.0 bits (214), Expect = 2e-16
Identities = 42/51 (82%), Positives = 48/51 (93%)
Frame = -3
Query: 699 SRLSYEQFSAFLANIKELNAQKQTREETLRKADEIFGSDNKDLYLSFQGLL 547
SRLSYEQFSAFLANIKELNA+KQ REETL+KA+EIFG +N DLY+SF+GLL
Sbjct: 273 SRLSYEQFSAFLANIKELNARKQGREETLQKAEEIFGKENNDLYISFKGLL 323
>ref|NP_704684.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
gi|23505044|emb|CAD51827.1| hypothetical protein,
conserved [Plasmodium falciparum 3D7]
Length = 249
Score = 66.2 bits (160), Expect = 4e-10
Identities = 32/54 (59%), Positives = 42/54 (77%)
Frame = -3
Query: 699 SRLSYEQFSAFLANIKELNAQKQTREETLRKADEIFGSDNKDLYLSFQGLLNRN 538
SRLSYEQF+ FL+NIK+LN +Q REETL+KA IFG N DLY F+ L++++
Sbjct: 195 SRLSYEQFNQFLSNIKKLNNHQQKREETLKKAQAIFGEANLDLYEEFKVLISKH 248
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,831,408
Number of Sequences: 1393205
Number of extensions: 11527822
Number of successful extensions: 24490
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24482
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
