Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004069A_C02 KMC004069A_c02
(1085 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO39488.1| SD13756p [Drosophila melanogaster] 44 0.006
ref|NP_651538.1| CG6066-PA [Drosophila melanogaster] gi|7301548|... 44 0.006
ref|NP_013996.1| protein possibly involved in protein synthesis;... 38 0.32
gb|AAL07510.1| alpha2A-adrenergic receptor [Danio rerio] 37 0.41
ref|NP_671823.1| similar to putative ribosomal protein; protein ... 37 0.54
>gb|AAO39488.1| SD13756p [Drosophila melanogaster]
Length = 328
Score = 43.5 bits (101), Expect = 0.006
Identities = 28/77 (36%), Positives = 39/77 (50%)
Frame = -3
Query: 963 RKRRNLILEGYTPRVKRKYLNRDQNSQAETQTADPCQPRKQSSKGKTKQAEAKQGQPSKS 784
R +R LI E P V K +R + E P+K+ KGK K ++++ KS
Sbjct: 189 RNQRVLIGEEGVPEVWGKSPSRPETDDVELVKGSYIGPKKKKKKGKRKHKKSEKKSKKKS 248
Query: 783 KKSKGEKGKCLISSSSA 733
KKSK +K K SSSS+
Sbjct: 249 KKSKKKKSKQESSSSSS 265
>ref|NP_651538.1| CG6066-PA [Drosophila melanogaster] gi|7301548|gb|AAF56669.1|
CG6066-PA [Drosophila melanogaster]
Length = 463
Score = 43.5 bits (101), Expect = 0.006
Identities = 28/77 (36%), Positives = 39/77 (50%)
Frame = -3
Query: 963 RKRRNLILEGYTPRVKRKYLNRDQNSQAETQTADPCQPRKQSSKGKTKQAEAKQGQPSKS 784
R +R LI E P V K +R + E P+K+ KGK K ++++ KS
Sbjct: 171 RNQRVLIGEEGVPEVWGKSPSRPETDDVELVKGSYIGPKKKKKKGKRKHKKSEKKSKKKS 230
Query: 783 KKSKGEKGKCLISSSSA 733
KKSK +K K SSSS+
Sbjct: 231 KKSKKKKSKQESSSSSS 247
>ref|NP_013996.1| protein possibly involved in protein synthesis; Ymr269wp
[Saccharomyces cerevisiae]
gi|2497215|sp|Q03525|YM8H_YEAST HYPOTHETICAL 16.2 KD
PROTEIN IN PRP24-RRN9 INTERGENIC REGION
gi|1084891|pir||S54481 hypothetical protein YMR269w -
yeast (Saccharomyces cerevisiae)
gi|809092|emb|CAA89252.1| unknown [Saccharomyces
cerevisiae]
Length = 142
Score = 37.7 bits (86), Expect = 0.32
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = -3
Query: 924 RVKRKYLNRDQ--NSQAETQTADPCQPRKQSSKGKTKQAEAKQGQPSKSKKSKGEK 763
+VKRK L +D+ ++ +E++ + +K+S KGK + + +G SK KKSK K
Sbjct: 70 KVKRKKLKKDKKTSNDSESKKKKKKKSKKESKKGKKSKHSSDEGDKSKHKKSKKSK 125
>gb|AAL07510.1| alpha2A-adrenergic receptor [Danio rerio]
Length = 388
Score = 37.4 bits (85), Expect = 0.41
Identities = 15/48 (31%), Positives = 32/48 (66%)
Frame = -3
Query: 906 LNRDQNSQAETQTADPCQPRKQSSKGKTKQAEAKQGQPSKSKKSKGEK 763
++ +++S ++ + ++PC +K+SSKGKTK ++ K G K++ + K
Sbjct: 248 VDMEESSSSDHKVSNPCSLKKKSSKGKTKLSQIKPGDGDKTEACQTTK 295
>ref|NP_671823.1| similar to putative ribosomal protein; protein id: At2g10980.1
[Arabidopsis thaliana]
Length = 270
Score = 37.0 bits (84), Expect = 0.54
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -1
Query: 1025 FDVEAYKRQSEIEDRYIFNRSGREET*YWKDI--HLVSRENISIEIKTAKQK 876
FD++AYKRQSEIE+ YI NR +D HL + +N + A +K
Sbjct: 8 FDIKAYKRQSEIEEMYIINRFRERRNKIGEDYPPHLSNSDNYFTQRYDAAKK 59
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 967,585,481
Number of Sequences: 1393205
Number of extensions: 22714444
Number of successful extensions: 67575
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 61156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67147
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 65395842999
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
