Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004067A_C01 KMC004067A_c01
(684 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563879.1| expressed protein; protein id: At1g10830.1, sup... 258 7e-68
gb|AAM63372.1| unknown [Arabidopsis thaliana] 256 2e-67
ref|NP_487994.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 191 1e-47
gb|ZP_00107264.1| hypothetical protein [Nostoc punctiforme] 184 8e-46
ref|ZP_00073663.1| hypothetical protein [Trichodesmium erythraeu... 182 3e-45
>ref|NP_563879.1| expressed protein; protein id: At1g10830.1, supported by cDNA:
21943., supported by cDNA: gi_13194773 [Arabidopsis
thaliana] gi|25402622|pir||A86242 hypothetical protein
[imported] - Arabidopsis thaliana
gi|4874265|gb|AAD31330.1|AC007354_3 EST gb|F13926 comes
from this gene. [Arabidopsis thaliana]
gi|13194774|gb|AAK15549.1|AF348578_1 unknown protein
[Arabidopsis thaliana]
Length = 367
Score = 258 bits (658), Expect = 7e-68
Identities = 115/143 (80%), Positives = 134/143 (93%)
Frame = -1
Query: 684 FLYPSTFNLLEVAAVDKPKLHLWETGIMRITRHPQLVGQVIWCLAHTIWIGNSVAVAASV 505
FLYPSTFNLLEVAAVDKPK+HLWETGIMRITRHPQ+VGQ++WCLAHT+WIGN+VA +AS+
Sbjct: 222 FLYPSTFNLLEVAAVDKPKMHLWETGIMRITRHPQMVGQIVWCLAHTLWIGNTVAASASL 281
Query: 504 GLIGHHLFGAWNGDRRLAKRYGEDFDLVKERTSIVPFAAILDGRQRLPKDFYKEFIRLPY 325
GLI HHLFGAWNGDRRLAKRYGEDF+ +K+RTS++PFAAI +GRQ LP+D+YKEF+RLPY
Sbjct: 282 GLIAHHLFGAWNGDRRLAKRYGEDFESIKKRTSVIPFAAIFEGRQVLPEDYYKEFVRLPY 341
Query: 324 LTITFLTLGAYFAHPLMQSA*FQ 256
L IT LT+GAYFAHPLMQ A F+
Sbjct: 342 LAITALTVGAYFAHPLMQGASFR 364
>gb|AAM63372.1| unknown [Arabidopsis thaliana]
Length = 367
Score = 256 bits (654), Expect = 2e-67
Identities = 114/143 (79%), Positives = 134/143 (92%)
Frame = -1
Query: 684 FLYPSTFNLLEVAAVDKPKLHLWETGIMRITRHPQLVGQVIWCLAHTIWIGNSVAVAASV 505
FLYPSTFNLLEVAAVDKPK+HLWETGIMRITRHPQ+VGQ++WCLAHT+WIGN+VA +AS+
Sbjct: 222 FLYPSTFNLLEVAAVDKPKMHLWETGIMRITRHPQMVGQIVWCLAHTLWIGNTVAASASL 281
Query: 504 GLIGHHLFGAWNGDRRLAKRYGEDFDLVKERTSIVPFAAILDGRQRLPKDFYKEFIRLPY 325
GLI HHLFGAWNGDRRLAKRYG+DF+ +K+RTS++PFAAI +GRQ LP+D+YKEF+RLPY
Sbjct: 282 GLIAHHLFGAWNGDRRLAKRYGKDFESIKKRTSVIPFAAIFEGRQVLPEDYYKEFVRLPY 341
Query: 324 LTITFLTLGAYFAHPLMQSA*FQ 256
L IT LT+GAYFAHPLMQ A F+
Sbjct: 342 LAITALTVGAYFAHPLMQGASFR 364
>ref|NP_487994.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25359499|pir||AC2300
hypothetical protein alr3954 [imported] - Nostoc sp.
(strain PCC 7120) gi|17133088|dbj|BAB75653.1|
ORF_ID:alr3954~hypothetical protein [Nostoc sp. PCC
7120]
Length = 238
Score = 191 bits (484), Expect = 1e-47
Identities = 85/137 (62%), Positives = 112/137 (81%)
Frame = -1
Query: 684 FLYPSTFNLLEVAAVDKPKLHLWETGIMRITRHPQLVGQVIWCLAHTIWIGNSVAVAASV 505
FLYP+TFNLLE+AA+ KP++HL+ETGI+RITRHPQ+VGQVIWC+AHT+W+G S + S
Sbjct: 96 FLYPATFNLLEIAAIQKPQVHLYETGIIRITRHPQMVGQVIWCIAHTLWLGTSFTLVTSF 155
Query: 504 GLIGHHLFGAWNGDRRLAKRYGEDFDLVKERTSIVPFAAILDGRQRLPKDFYKEFIRLPY 325
GLI HHLFG W+GDRR++KRYGE F++VK+RTSI+PFAAI+DGRQ + ++EFIR Y
Sbjct: 156 GLILHHLFGVWHGDRRMSKRYGEAFEIVKQRTSIIPFAAIIDGRQSIK---WEEFIRPAY 212
Query: 324 LTITFLTLGAYFAHPLM 274
L + ++AHPL+
Sbjct: 213 LGVAIFVALLWWAHPLL 229
>gb|ZP_00107264.1| hypothetical protein [Nostoc punctiforme]
Length = 240
Score = 184 bits (468), Expect = 8e-46
Identities = 79/140 (56%), Positives = 111/140 (78%)
Frame = -1
Query: 684 FLYPSTFNLLEVAAVDKPKLHLWETGIMRITRHPQLVGQVIWCLAHTIWIGNSVAVAASV 505
FLYP+TFNLLE+AA+ KP++HL+ETGI+RITRHPQ+VGQ+IWC+AHT+W+G + + S+
Sbjct: 96 FLYPATFNLLEIAAIQKPQVHLYETGIIRITRHPQMVGQIIWCVAHTLWLGTTFTLVTSI 155
Query: 504 GLIGHHLFGAWNGDRRLAKRYGEDFDLVKERTSIVPFAAILDGRQRLPKDFYKEFIRLPY 325
GL+ HHLFG W+GDRRL+ RYGE F++ K+RTSI+PF AI+DGRQ + ++EF+R Y
Sbjct: 156 GLVLHHLFGVWHGDRRLSDRYGEAFEIAKQRTSIIPFKAIIDGRQSI---LWQEFLRPSY 212
Query: 324 LTITFLTLGAYFAHPLMQSA 265
L + +++HPL+ A
Sbjct: 213 LGVAIFIALLWWSHPLLMEA 232
>ref|ZP_00073663.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 237
Score = 182 bits (463), Expect = 3e-45
Identities = 86/137 (62%), Positives = 105/137 (75%)
Frame = -1
Query: 684 FLYPSTFNLLEVAAVDKPKLHLWETGIMRITRHPQLVGQVIWCLAHTIWIGNSVAVAASV 505
FLYPSTFNLLE+AA+ KP++HL ETGI+RITRHPQ+VGQVIWC+AHT+W+G S SV
Sbjct: 95 FLYPSTFNLLEIAAIQKPQVHLHETGIIRITRHPQMVGQVIWCIAHTLWLGTSFTFVTSV 154
Query: 504 GLIGHHLFGAWNGDRRLAKRYGEDFDLVKERTSIVPFAAILDGRQRLPKDFYKEFIRLPY 325
GLI HHLFG W+GDRRL KR+GE +D +K RTS++PF AI+ GRQ L +EFIR Y
Sbjct: 155 GLILHHLFGVWHGDRRLQKRFGESYDQLKSRTSVIPFLAIIQGRQTL---HLQEFIRWAY 211
Query: 324 LTITFLTLGAYFAHPLM 274
L I L + AHPL+
Sbjct: 212 LGIGLFVLLFWQAHPLL 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,442,439
Number of Sequences: 1393205
Number of extensions: 11895852
Number of successful extensions: 25965
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25956
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
