Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004054A_C01 KMC004054A_c01
(489 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172144.1| 4-hydroxyphenylpyruvate dioxygenase (HPD); prot... 144 7e-34
pir||B86201 protein F12K11.9 [imported] - Arabidopsis thaliana g... 144 7e-34
gb|AAM96960.1| 4-hydroxyphenylpyruvate dioxygenase HPD [Arabidop... 144 7e-34
sp|Q9ARF9|HPPD_SOLSC 4-hydroxyphenylpyruvate dioxygenase (4HPPD)... 143 1e-33
sp|O23920|HPPD_DAUCA 4-hydroxyphenylpyruvate dioxygenase (4HPPD)... 142 2e-33
>ref|NP_172144.1| 4-hydroxyphenylpyruvate dioxygenase (HPD); protein id: At1g06570.1,
supported by cDNA: gi_16226617, supported by cDNA:
gi_18252206, supported by cDNA: gi_2145038, supported by
cDNA: gi_2392517 [Arabidopsis thaliana]
gi|3334223|sp|P93836|HPPD_ARATH 4-hydroxyphenylpyruvate
dioxygenase (4HPPD) (HPD) (HPPDase)
gi|11280562|pir||T51585 4-hydroxyphenylpyruvate
dioxygenase (EC 1.13.11.27) [validated] - Arabidopsis
thaliana gi|2145039|gb|AAB58404.1|
p-hydroxyphenylpyruvate dioxygenase [Arabidopsis
thaliana] gi|2392518|gb|AAB70025.1|
p-hydroxyphenylpyruvate dioxygenase [Arabidopsis
thaliana] gi|3098559|gb|AAC15697.1|
4-hydroxyphenylpyruvate dioxygenase [Arabidopsis
thaliana] gi|16226618|gb|AAL16215.1|AF428446_1
At1g06570/F12K11_12 [Arabidopsis thaliana]
gi|18252207|gb|AAL61936.1| 4-hydroxyphenylpyruvate
dioxygenase (HPD) [Arabidopsis thaliana]
gi|22136134|gb|AAM91145.1| 4-hydroxyphenylpyruvate
dioxygenase (HPD) [Arabidopsis thaliana]
Length = 445
Score = 144 bits (362), Expect = 7e-34
Identities = 67/73 (91%), Positives = 71/73 (96%)
Frame = -3
Query: 487 DRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMVKDEEGKEYQKGGCGGFGKGNFSELFK 308
DRDDQGTLLQIFTKP+GDRPTIFIEIIQRVGCM+KDEEGK YQ GGCGGFGKGNFSELFK
Sbjct: 370 DRDDQGTLLQIFTKPLGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFK 429
Query: 307 SIEEYEKTLEARR 269
SIEEYEKTLEA++
Sbjct: 430 SIEEYEKTLEAKQ 442
>pir||B86201 protein F12K11.9 [imported] - Arabidopsis thaliana
gi|6692679|gb|AAF24813.1|AC007592_6 F12K11.9
[Arabidopsis thaliana]
Length = 473
Score = 144 bits (362), Expect = 7e-34
Identities = 67/73 (91%), Positives = 71/73 (96%)
Frame = -3
Query: 487 DRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMVKDEEGKEYQKGGCGGFGKGNFSELFK 308
DRDDQGTLLQIFTKP+GDRPTIFIEIIQRVGCM+KDEEGK YQ GGCGGFGKGNFSELFK
Sbjct: 398 DRDDQGTLLQIFTKPLGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFK 457
Query: 307 SIEEYEKTLEARR 269
SIEEYEKTLEA++
Sbjct: 458 SIEEYEKTLEAKQ 470
>gb|AAM96960.1| 4-hydroxyphenylpyruvate dioxygenase HPD [Arabidopsis thaliana]
Length = 473
Score = 144 bits (362), Expect = 7e-34
Identities = 67/73 (91%), Positives = 71/73 (96%)
Frame = -3
Query: 487 DRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMVKDEEGKEYQKGGCGGFGKGNFSELFK 308
DRDDQGTLLQIFTKP+GDRPTIFIEIIQRVGCM+KDEEGK YQ GGCGGFGKGNFSELFK
Sbjct: 398 DRDDQGTLLQIFTKPLGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFK 457
Query: 307 SIEEYEKTLEARR 269
SIEEYEKTLEA++
Sbjct: 458 SIEEYEKTLEAKQ 470
>sp|Q9ARF9|HPPD_SOLSC 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase)
gi|13810184|emb|CAC37394.1| 4-hydroxyphenylpyruvate
dioxygenase [Solenostemon scutellarioides]
Length = 436
Score = 143 bits (360), Expect = 1e-33
Identities = 67/75 (89%), Positives = 71/75 (94%)
Frame = -3
Query: 487 DRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMVKDEEGKEYQKGGCGGFGKGNFSELFK 308
DRDDQGTLLQIFTKPVGDRPT+FIEIIQRVGCM+KDEEGK YQKGGCGGFGKGNFSELFK
Sbjct: 357 DRDDQGTLLQIFTKPVGDRPTLFIEIIQRVGCMMKDEEGKMYQKGGCGGFGKGNFSELFK 416
Query: 307 SIEEYEKTLEARRTT 263
SIEEYEK LE++ T
Sbjct: 417 SIEEYEKMLESKLVT 431
>sp|O23920|HPPD_DAUCA 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase)
gi|7459542|pir||T14353 probable 4-hydroxyphenylpyruvate
dioxygenase (EC 1.13.11.27) - carrot
gi|2231615|gb|AAC49815.1| 4-hydroxyphenylpyruvate
dioxygenase [Daucus carota]
Length = 442
Score = 142 bits (358), Expect = 2e-33
Identities = 66/75 (88%), Positives = 72/75 (96%)
Frame = -3
Query: 487 DRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMVKDEEGKEYQKGGCGGFGKGNFSELFK 308
DRDDQGTLLQIFTKPVGDRPT+FIEIIQRVGCM+KD+ G+ YQKGGCGGFGKGNFSELFK
Sbjct: 363 DRDDQGTLLQIFTKPVGDRPTLFIEIIQRVGCMLKDDAGQMYQKGGCGGFGKGNFSELFK 422
Query: 307 SIEEYEKTLEARRTT 263
SIEEYEKTLEA++ T
Sbjct: 423 SIEEYEKTLEAKQIT 437
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,706,705
Number of Sequences: 1393205
Number of extensions: 10142362
Number of successful extensions: 32264
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 30669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32159
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
