Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004041A_C01 KMC004041A_c01
(429 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566629.1| abscisic acid responsive elements-binding facto... 41 0.004
ref|NP_567949.1| abscisic acid responsive elements-binding facto... 39 0.019
gb|AAO06115.1| bZIP transcription factor ABI5 [Hordeum vulgare s... 37 0.074
gb|AAL86016.1| Raba1 [Oryza sativa] 35 0.28
dbj|BAA83740.1| TRAB1 [Oryza sativa (japonica cultivar-group)] 35 0.28
>ref|NP_566629.1| abscisic acid responsive elements-binding factor; protein id:
At3g19290.1, supported by cDNA: gi_15292926, supported
by cDNA: gi_20259042, supported by cDNA: gi_9967418
[Arabidopsis thaliana]
gi|6739283|gb|AAF27182.1|AF093547_1 abscisic acid
responsive elements-binding factor [Arabidopsis
thaliana] gi|9967419|dbj|BAB12405.1| ABA-responsive
element binding protein 2 (AREB2) [Arabidopsis thaliana]
gi|15292927|gb|AAK92834.1| putative abscisic acid
responsive elements-binding factor [Arabidopsis
thaliana] gi|20259043|gb|AAM14237.1| putative abscisic
acid responsive elements-binding factor [Arabidopsis
thaliana]
Length = 431
Score = 40.8 bits (94), Expect = 0.004
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -2
Query: 404 KPWGNSKRQCLRRTLTGPW 348
+PWG SKRQCLRRTLTGPW
Sbjct: 414 RPWG-SKRQCLRRTLTGPW 431
>ref|NP_567949.1| abscisic acid responsive elements-binding factor(ABF3); protein id:
At4g34000.1, supported by cDNA: gi_15451049, supported
by cDNA: gi_20148276, supported by cDNA: gi_6739279
[Arabidopsis thaliana]
gi|6739280|gb|AAF27181.1|AF093546_1 abscisic acid
responsive elements-binding factor [Arabidopsis
thaliana] gi|15451050|gb|AAK96796.1| Unknown protein
[Arabidopsis thaliana] gi|20148277|gb|AAM10029.1|
unknown protein [Arabidopsis thaliana]
Length = 454
Score = 38.5 bits (88), Expect = 0.019
Identities = 16/20 (80%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Frame = -2
Query: 404 KPWG-NSKRQCLRRTLTGPW 348
+PWG KRQCLRRTLTGPW
Sbjct: 435 QPWGMGCKRQCLRRTLTGPW 454
>gb|AAO06115.1| bZIP transcription factor ABI5 [Hordeum vulgare subsp. vulgare]
Length = 353
Score = 36.6 bits (83), Expect = 0.074
Identities = 14/17 (82%), Positives = 15/17 (87%)
Frame = -2
Query: 398 WGNSKRQCLRRTLTGPW 348
+G KRQCLRRTLTGPW
Sbjct: 337 FGRKKRQCLRRTLTGPW 353
>gb|AAL86016.1| Raba1 [Oryza sativa]
Length = 90
Score = 34.7 bits (78), Expect = 0.28
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -2
Query: 428 NKDLNSGYKPWGNSKRQCLRRTLTGPW 348
N+ L + P+G KR CLRRTLTGPW
Sbjct: 65 NQVLEAVNNPYGQKKR-CLRRTLTGPW 90
>dbj|BAA83740.1| TRAB1 [Oryza sativa (japonica cultivar-group)]
Length = 318
Score = 34.7 bits (78), Expect = 0.28
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -2
Query: 428 NKDLNSGYKPWGNSKRQCLRRTLTGPW 348
N+ L + P+G KR CLRRTLTGPW
Sbjct: 293 NQVLEAVNNPYGQKKR-CLRRTLTGPW 318
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 364,141,271
Number of Sequences: 1393205
Number of extensions: 7323046
Number of successful extensions: 13459
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13458
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
