Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004034A_C01 KMC004034A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD48198.1| RNA-binding protein [Medicago truncatula] 132 2e-30
dbj|BAC42194.1| unknown protein [Arabidopsis thaliana] 119 3e-26
dbj|BAC24834.1| OSJNBa0038F22.13 [Oryza sativa (japonica cultiva... 105 5e-22
pir||C86346 F16F4.3 protein - Arabidopsis thaliana gi|8920632|gb... 86 3e-16
ref|NP_177820.1| hypothetical protein; protein id: At1g76940.1 [... 85 5e-16
>emb|CAD48198.1| RNA-binding protein [Medicago truncatula]
Length = 261
Score = 132 bits (333), Expect = 2e-30
Identities = 65/74 (87%), Positives = 69/74 (92%)
Frame = -2
Query: 550 FVGYREVRLVTKESKHRGGDPLILCFVDFENPACAATALSALQGYKVDELDPESGHLRLQ 371
FVGYREVRLV+KE+KHRG DPLILCFVDF NPACAATALSALQGYKVDE++PES HLRLQ
Sbjct: 174 FVGYREVRLVSKEAKHRG-DPLILCFVDFANPACAATALSALQGYKVDEINPESSHLRLQ 232
Query: 370 FSRYPGPRSGPGFR 329
FSRYPGPRSG G R
Sbjct: 233 FSRYPGPRSGGGPR 246
>dbj|BAC42194.1| unknown protein [Arabidopsis thaliana]
Length = 156
Score = 119 bits (297), Expect = 3e-26
Identities = 58/77 (75%), Positives = 66/77 (85%)
Frame = -2
Query: 550 FVGYREVRLVTKESKHRGGDPLILCFVDFENPACAATALSALQGYKVDELDPESGHLRLQ 371
FVGYREVRLVTK+SKHR GDP++LCFVDF NPACAATALSALQGY++DE + +S LRLQ
Sbjct: 82 FVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQ 141
Query: 370 FSRYPGPRSGPGFRGKR 320
FSR PG R PG RG+R
Sbjct: 142 FSRKPGSR--PGQRGRR 156
>dbj|BAC24834.1| OSJNBa0038F22.13 [Oryza sativa (japonica cultivar-group)]
Length = 293
Score = 105 bits (261), Expect = 5e-22
Identities = 50/77 (64%), Positives = 60/77 (76%)
Frame = -2
Query: 550 FVGYREVRLVTKESKHRGGDPLILCFVDFENPACAATALSALQGYKVDELDPESGHLRLQ 371
FVG+REVRLV+KE++H GGDP++LCFVDFE + AA A+ ALQGYK DE D S HLRLQ
Sbjct: 214 FVGFREVRLVSKEARHPGGDPILLCFVDFETASQAAIAMDALQGYKFDEHDRNSPHLRLQ 273
Query: 370 FSRYPGPRSGPGFRGKR 320
F+R+ GPR G G G R
Sbjct: 274 FARFTGPRGGSGPGGGR 290
>pir||C86346 F16F4.3 protein - Arabidopsis thaliana
gi|8920632|gb|AAF81354.1|AC036104_3 Contains weak
similarity to bab503 major core protein from Simian
T-cell lymphotrophic virus type 1 gb|AF230486.
[Arabidopsis thaliana]
Length = 430
Score = 85.9 bits (211), Expect = 3e-16
Identities = 43/63 (68%), Positives = 49/63 (77%)
Frame = -2
Query: 508 KHRGGDPLILCFVDFENPACAATALSALQGYKVDELDPESGHLRLQFSRYPGPRSGPGFR 329
+ R GDP +LCFVDFEN ACAATALSALQ Y++DE +P+S LRLQF R PGPR PG R
Sbjct: 337 RERSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPR--PGQR 394
Query: 328 GKR 320
G R
Sbjct: 395 GGR 397
>ref|NP_177820.1| hypothetical protein; protein id: At1g76940.1 [Arabidopsis
thaliana]
Length = 269
Score = 85.1 bits (209), Expect = 5e-16
Identities = 39/50 (78%), Positives = 44/50 (88%)
Frame = -2
Query: 541 YREVRLVTKESKHRGGDPLILCFVDFENPACAATALSALQGYKVDELDPE 392
YREVRLVTK+SKHR GDP++LCFVDF NPACAATALSALQG +V + D E
Sbjct: 185 YREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGNQVQDQDKE 234
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,031,687
Number of Sequences: 1393205
Number of extensions: 10244647
Number of successful extensions: 27333
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 25068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27318
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
