Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004031A_C01 KMC004031A_c01
(439 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680135.1| expressed protein; protein id: At5g01750.2, sup... 82 2e-15
ref|NP_187780.1| hypothetical protein; protein id: At3g11740.1 [... 80 4e-15
dbj|BAC55839.1| OSJNBa0086N05.7 [Oryza sativa (japonica cultivar... 64 6e-10
ref|NP_174646.1| unknown protein; protein id: At1g33840.1 [Arabi... 62 2e-09
gb|AAF97296.1|AC010164_18 Hypothetical protein [Arabidopsis thal... 61 4e-09
>ref|NP_680135.1| expressed protein; protein id: At5g01750.2, supported by cDNA:
gi_13926236 [Arabidopsis thaliana]
gi|11282362|pir||T48196 hypothetical protein T20L15.20 -
Arabidopsis thaliana gi|7329648|emb|CAB82745.1| putative
protein [Arabidopsis thaliana]
gi|13926237|gb|AAK49593.1|AF372877_1 AT5g01750/T20L15_20
[Arabidopsis thaliana] gi|22655412|gb|AAM98298.1|
At5g01750/T20L15_20 [Arabidopsis thaliana]
Length = 217
Score = 81.6 bits (200), Expect = 2e-15
Identities = 33/50 (66%), Positives = 46/50 (92%)
Frame = -2
Query: 405 ILLQMHKKHTVQSILIGKDNFTVTVYPNIDYAFIVALIVILDEINEDEKA 256
I+ QMH+KHTVQS+ +GKDNF+VTVYPN+DYAFI +L+VILD++N +++A
Sbjct: 167 IVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDRA 216
>ref|NP_187780.1| hypothetical protein; protein id: At3g11740.1 [Arabidopsis
thaliana] gi|6671930|gb|AAF23190.1|AC016795_3
hypothetical protein [Arabidopsis thaliana]
Length = 159
Score = 80.5 bits (197), Expect = 4e-15
Identities = 36/51 (70%), Positives = 45/51 (87%)
Frame = -2
Query: 405 ILLQMHKKHTVQSILIGKDNFTVTVYPNIDYAFIVALIVILDEINEDEKAE 253
I+ QMHKKHT QSILIGK NF+VTVYPN+D+AFIV+LIVILD+IN ++ +
Sbjct: 109 IVAQMHKKHTAQSILIGKSNFSVTVYPNVDFAFIVSLIVILDDINREDSED 159
>dbj|BAC55839.1| OSJNBa0086N05.7 [Oryza sativa (japonica cultivar-group)]
Length = 214
Score = 63.5 bits (153), Expect = 6e-10
Identities = 24/49 (48%), Positives = 39/49 (78%)
Frame = -2
Query: 405 ILLQMHKKHTVQSILIGKDNFTVTVYPNIDYAFIVALIVILDEINEDEK 259
I+ QM++KHT S+++G+D F++TV+P +DY FI AL+ ILD+++ D K
Sbjct: 165 IIAQMNRKHTAASVVLGRDVFSITVFPQVDYVFIAALVAILDDVHRDRK 213
>ref|NP_174646.1| unknown protein; protein id: At1g33840.1 [Arabidopsis thaliana]
Length = 206
Score = 61.6 bits (148), Expect = 2e-09
Identities = 29/48 (60%), Positives = 37/48 (76%)
Frame = -2
Query: 408 LILLQMHKKHTVQSILIGKDNFTVTVYPNIDYAFIVALIVILDEINED 265
+IL QM +K T+QS+L GKDNF +TV PN+DYAFI +LIVIL +D
Sbjct: 142 IILAQMREKKTMQSVLFGKDNFCLTVNPNVDYAFIASLIVILFHQKDD 189
>gb|AAF97296.1|AC010164_18 Hypothetical protein [Arabidopsis thaliana]
Length = 254
Score = 60.8 bits (146), Expect = 4e-09
Identities = 28/42 (66%), Positives = 35/42 (82%)
Frame = -2
Query: 408 LILLQMHKKHTVQSILIGKDNFTVTVYPNIDYAFIVALIVIL 283
+IL QM +K T+QS+L GKDNF +TV PN+DYAFI +LIVIL
Sbjct: 166 IILAQMREKKTMQSVLFGKDNFCLTVNPNVDYAFIASLIVIL 207
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 350,745,519
Number of Sequences: 1393205
Number of extensions: 6955304
Number of successful extensions: 16183
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 15751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16181
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
