Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004028A_C01 KMC004028A_c01
(655 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P49087|VATA_MAIZE Vacuolar ATP synthase catalytic subunit A (... 92 8e-18
gb|AAO23981.1| vacuolar H+-ATPase A2 subunit isoform; V-ATPase A... 91 1e-17
sp|Q39291|VATA_BRANA Vacuolar ATP synthase catalytic subunit A (... 91 1e-17
sp|P09469|VATA_DAUCA Vacuolar ATP synthase catalytic subunit A (... 91 1e-17
gb|AAO23980.1| vacuolar H+-ATPase A1 subunit isoform; V-ATPase A... 90 3e-17
>sp|P49087|VATA_MAIZE Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit) gi|1049253|gb|AAA80346.1| vacuolar ATPase 69
kDa subunit
Length = 561
Score = 91.7 bits (226), Expect = 8e-18
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = -1
Query: 655 KHRLGDLFYRLVSQKFEDPAEGESALVAKFQQLHDDLTNGFRNLEDEAR 509
KHRLGDLFYRLVSQKFEDPAEGE ALV KF++L+DDLT GFRNLEDEAR
Sbjct: 513 KHRLGDLFYRLVSQKFEDPAEGEEALVGKFKKLYDDLTTGFRNLEDEAR 561
>gb|AAO23981.1| vacuolar H+-ATPase A2 subunit isoform; V-ATPase A2 subunit isoform
[Lycopersicon esculentum]
Length = 623
Score = 91.3 bits (225), Expect = 1e-17
Identities = 43/49 (87%), Positives = 45/49 (91%)
Frame = -1
Query: 655 KHRLGDLFYRLVSQKFEDPAEGESALVAKFQQLHDDLTNGFRNLEDEAR 509
KHRLGDLFYRLVSQKFEDP EGE ALVAKF++LHDDLT GFRNLEDE R
Sbjct: 575 KHRLGDLFYRLVSQKFEDPPEGEDALVAKFKKLHDDLTAGFRNLEDETR 623
>sp|Q39291|VATA_BRANA Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit) (Tonoplast ATPase 70 kDa subunit) (BN59)
gi|1362024|pir||S57790 H+-exporting ATPase (EC 3.6.3.6)
70K chain, vacuolar (clone BN59) - rape
gi|558479|gb|AAA82881.1| tonoplast ATPase 70 kDa subunit
Length = 623
Score = 91.3 bits (225), Expect = 1e-17
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = -1
Query: 655 KHRLGDLFYRLVSQKFEDPAEGESALVAKFQQLHDDLTNGFRNLEDEAR 509
KHRLGDLFYRLVSQKFEDPAEGE LV KF++LHDDLT+GFRNLEDE R
Sbjct: 575 KHRLGDLFYRLVSQKFEDPAEGEDVLVGKFKKLHDDLTSGFRNLEDETR 623
>sp|P09469|VATA_DAUCA Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit) gi|67952|pir||PXPZV9 H+-exporting ATPase (EC
3.6.3.6), vacuolar, 69K chain - carrot
gi|167560|gb|AAA33139.1| vacular H+-ATPase
Length = 623
Score = 91.3 bits (225), Expect = 1e-17
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = -1
Query: 655 KHRLGDLFYRLVSQKFEDPAEGESALVAKFQQLHDDLTNGFRNLEDEAR 509
KHRLGDLFYRLVSQKFEDPAEGE LV KF++LHDDLT+GFRNLEDE R
Sbjct: 575 KHRLGDLFYRLVSQKFEDPAEGEDVLVGKFKKLHDDLTSGFRNLEDETR 623
>gb|AAO23980.1| vacuolar H+-ATPase A1 subunit isoform; V-ATPase A1 subunit isoform
[Lycopersicon esculentum]
Length = 623
Score = 89.7 bits (221), Expect = 3e-17
Identities = 42/49 (85%), Positives = 43/49 (87%)
Frame = -1
Query: 655 KHRLGDLFYRLVSQKFEDPAEGESALVAKFQQLHDDLTNGFRNLEDEAR 509
KHRLGDLFYRLVSQKFEDPAEGE LV KFQ+LHDDL GFRNLEDE R
Sbjct: 575 KHRLGDLFYRLVSQKFEDPAEGEDVLVGKFQKLHDDLVAGFRNLEDETR 623
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,894,707
Number of Sequences: 1393205
Number of extensions: 11403238
Number of successful extensions: 26642
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 26017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26611
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
