Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004016A_C01 KMC004016A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA76424.1| rac-type small GTP-binding protein [Cicer arieti... 115 3e-25
emb|CAA98189.1| RAC1 [Lotus japonicus] 114 1e-24
sp|Q39435|RAC1_BETVU RAC-LIKE GTP BINDING PROTEIN RHO1 gi|974780... 113 1e-24
gb|AAM18133.1|AF498357_1 small G-protein ROP3 [Medicago truncatula] 113 2e-24
gb|AAK31299.1| Rac-like GTPase 1 [Nicotiana tabacum] 112 4e-24
>dbj|BAA76424.1| rac-type small GTP-binding protein [Cicer arietinum]
Length = 197
Score = 115 bits (289), Expect = 3e-25
Identities = 56/62 (90%), Positives = 61/62 (98%)
Frame = -2
Query: 561 VPITTAQGEELRKLIGAPMYIECSSKTQQNIKAVFDAAIKVVLQPPKKKRKKRKGQKACS 382
VPITTAQGEELRKLIGAP+YIECSSKTQ+N+KAVFDAAIKVVLQPPK+K+ KRKGQKACS
Sbjct: 136 VPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDAAIKVVLQPPKQKKTKRKGQKACS 195
Query: 381 IL 376
IL
Sbjct: 196 IL 197
>emb|CAA98189.1| RAC1 [Lotus japonicus]
Length = 197
Score = 114 bits (284), Expect = 1e-24
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = -2
Query: 561 VPITTAQGEELRKLIGAPMYIECSSKTQQNIKAVFDAAIKVVLQPPKKKRKKRKGQKACS 382
VPITTAQGEELRKLIGAP YIECSSKTQQN+KAVFDAAIKVVLQPPK+K+KKR+ QK+CS
Sbjct: 136 VPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKREAQKSCS 195
Query: 381 IL 376
IL
Sbjct: 196 IL 197
>sp|Q39435|RAC1_BETVU RAC-LIKE GTP BINDING PROTEIN RHO1 gi|974780|emb|CAA89050.1| small G
protein [Beta vulgaris]
Length = 197
Score = 113 bits (283), Expect = 1e-24
Identities = 56/62 (90%), Positives = 58/62 (93%)
Frame = -2
Query: 561 VPITTAQGEELRKLIGAPMYIECSSKTQQNIKAVFDAAIKVVLQPPKKKRKKRKGQKACS 382
VPITTAQGEELRKLIGAP YIECSSKTQQN+KAVFDAAIKVVLQPPK K+KK K QKACS
Sbjct: 136 VPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKTKKKKSKAQKACS 195
Query: 381 IL 376
IL
Sbjct: 196 IL 197
>gb|AAM18133.1|AF498357_1 small G-protein ROP3 [Medicago truncatula]
Length = 197
Score = 113 bits (282), Expect = 2e-24
Identities = 54/61 (88%), Positives = 60/61 (97%)
Frame = -2
Query: 558 PITTAQGEELRKLIGAPMYIECSSKTQQNIKAVFDAAIKVVLQPPKKKRKKRKGQKACSI 379
PITTAQGEELRKLIGAP+YIECSSKTQ+N+KAVFD+AIKVVLQPPK+K+ KRKGQKACSI
Sbjct: 137 PITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDSAIKVVLQPPKQKKTKRKGQKACSI 196
Query: 378 L 376
L
Sbjct: 197 L 197
>gb|AAK31299.1| Rac-like GTPase 1 [Nicotiana tabacum]
Length = 197
Score = 112 bits (279), Expect = 4e-24
Identities = 55/62 (88%), Positives = 58/62 (92%)
Frame = -2
Query: 561 VPITTAQGEELRKLIGAPMYIECSSKTQQNIKAVFDAAIKVVLQPPKKKRKKRKGQKACS 382
VPITTAQGEELRK IGAP YIECSSKTQQN+KAVFDAAIKVVLQPPK+K+KK K QKACS
Sbjct: 136 VPITTAQGEELRKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKGKAQKACS 195
Query: 381 IL 376
IL
Sbjct: 196 IL 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,537,628
Number of Sequences: 1393205
Number of extensions: 10272346
Number of successful extensions: 22053
Number of sequences better than 10.0: 365
Number of HSP's better than 10.0 without gapping: 21246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21934
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
