Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004010A_C01 KMC004010A_c01
(919 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB09766.1| gene_id:MNC17.12~unknown protein [Arabidopsis th... 38 0.19
ref|NP_200729.2| putative protein; protein id: At5g59210.1, supp... 38 0.19
ref|NP_694904.1| NADH dehydrogenase subunit 4 [Brugia malayi] gi... 38 0.25
gb|AAO72598.1| myosin-like protein [Oryza sativa (japonica culti... 37 0.55
ref|XP_161365.1| hypothetical protein XP_161365 [Mus musculus] 33 7.9
>dbj|BAB09766.1| gene_id:MNC17.12~unknown protein [Arabidopsis thaliana]
Length = 463
Score = 38.1 bits (87), Expect = 0.19
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = -2
Query: 393 LKFIAELMLRNQEQEQLTTKQARIASLMPEKQDLGENRCIL 271
L+ E +LR QEQ +L +Q R+ASLM EKQ+L + +L
Sbjct: 232 LELQKESVLRQQEQHRLAEEQTRVASLMSEKQELEQKISVL 272
>ref|NP_200729.2| putative protein; protein id: At5g59210.1, supported by cDNA:
gi_19310500 [Arabidopsis thaliana]
gi|19310501|gb|AAL84984.1| AT5g59210/mnc17_100
[Arabidopsis thaliana] gi|21360403|gb|AAM47317.1|
AT5g59210/mnc17_100 [Arabidopsis thaliana]
Length = 434
Score = 38.1 bits (87), Expect = 0.19
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = -2
Query: 393 LKFIAELMLRNQEQEQLTTKQARIASLMPEKQDLGENRCIL 271
L+ E +LR QEQ +L +Q R+ASLM EKQ+L + +L
Sbjct: 203 LELQKESVLRQQEQHRLAEEQTRVASLMSEKQELEQKISVL 243
>ref|NP_694904.1| NADH dehydrogenase subunit 4 [Brugia malayi]
gi|23307677|gb|AAN17805.1| NADH dehydrogenase subunit 4
[Brugia malayi]
Length = 409
Score = 37.7 bits (86), Expect = 0.25
Identities = 35/109 (32%), Positives = 48/109 (43%)
Frame = -1
Query: 877 FIFFQFVFLTSFFSMFVIKGEGNLRFCACMEV*DSFNCLFL*TN*RSLKSEEEEPYTGCA 698
F F F+F FFS+FV+ G + +C C DSFN +FL +
Sbjct: 11 FFFSPFLFFV-FFSIFVLLGFFDYSWCGCFFFFDSFNFVFL------------------S 51
Query: 697 FLKYFPLIYFGFVYLFELNFFSGLSNRLDLFVWCSPFFIFQPSCLDMYI 551
F+ F L GF+ + E+ GL L V+ S F F S L +YI
Sbjct: 52 FMSVFIL---GFICVSEV--LGGLVFYSCLIVFFSVCFFFSGSFLILYI 95
>gb|AAO72598.1| myosin-like protein [Oryza sativa (japonica cultivar-group)]
gi|29369065|gb|AAO72684.1| putative myosin heavy chain
[Oryza sativa (japonica cultivar-group)]
Length = 276
Score = 36.6 bits (83), Expect = 0.55
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = -2
Query: 390 KFIAELMLRNQEQEQLTTKQARIASLMPEKQDLGE 286
K E +LR QEQ++LT +Q+ ASL+ EK+DL E
Sbjct: 35 KLSEESLLRQQEQQKLTGEQSHAASLVAEKKDLEE 69
>ref|XP_161365.1| hypothetical protein XP_161365 [Mus musculus]
Length = 545
Score = 32.7 bits (73), Expect = 7.9
Identities = 17/41 (41%), Positives = 23/41 (55%)
Frame = +3
Query: 237 AINNGTNCKHHPRCNDSLPSPAFQASVMQCELALLSIVPAP 359
A G +C HHPRC +L P+ +V Q LAL+S + P
Sbjct: 3 ATGKGESC-HHPRCLLALQQPSKAVTVYQSYLALMSEIQEP 42
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 750,220,054
Number of Sequences: 1393205
Number of extensions: 16257939
Number of successful extensions: 50713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 48258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50660
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 50473155824
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
