Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003992A_C01 KMC003992A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566579.1| ribosomal protein L3; protein id: At3g17465.1 [... 174 9e-43
gb|AAK43985.2|AF370170_1 putative ribosomal protein L3 [Arabidop... 174 9e-43
dbj|BAA92206.1| unnamed protein product [Oryza sativa (japonica ... 166 2e-40
gb|ZP_00053925.1| hypothetical protein [Magnetospirillum magneto... 69 4e-11
ref|NP_521140.1| PROBABLE 50S RIBOSOMAL SUBUNIT PROTEIN L3 (RRNA... 69 4e-11
>ref|NP_566579.1| ribosomal protein L3; protein id: At3g17465.1 [Arabidopsis
thaliana]
Length = 324
Score = 174 bits (441), Expect = 9e-43
Identities = 81/105 (77%), Positives = 90/105 (85%)
Frame = -3
Query: 641 STGQRDAPGRVFKNRKMPGRMGGVQRTVKNVWIYKIDPARNLMWVKGQVPGATGNFVFIT 462
STGQRDAPG+VFK RKM GRMG QRTVKNVW+YKIDPARNLMWV+GQVPGA GNFVFI
Sbjct: 220 STGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIK 279
Query: 461 DAVYEKPDISILPFPTYFVPEDEDIDNMKPLVADLGDVDPFMITD 327
DA +KPDIS LPFPTY PEDED ++PLVADLG+VDPFM+ +
Sbjct: 280 DAWCKKPDISKLPFPTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324
>gb|AAK43985.2|AF370170_1 putative ribosomal protein L3 [Arabidopsis thaliana]
Length = 134
Score = 174 bits (441), Expect = 9e-43
Identities = 81/105 (77%), Positives = 90/105 (85%)
Frame = -3
Query: 641 STGQRDAPGRVFKNRKMPGRMGGVQRTVKNVWIYKIDPARNLMWVKGQVPGATGNFVFIT 462
STGQRDAPG+VFK RKM GRMG QRTVKNVW+YKIDPARNLMWV+GQVPGA GNFVFI
Sbjct: 30 STGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIK 89
Query: 461 DAVYEKPDISILPFPTYFVPEDEDIDNMKPLVADLGDVDPFMITD 327
DA +KPDIS LPFPTY PEDED ++PLVADLG+VDPFM+ +
Sbjct: 90 DAWCKKPDISKLPFPTYLAPEDEDPSELEPLVADLGEVDPFMLAE 134
>dbj|BAA92206.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 319
Score = 166 bits (420), Expect = 2e-40
Identities = 77/105 (73%), Positives = 92/105 (87%)
Frame = -3
Query: 641 STGQRDAPGRVFKNRKMPGRMGGVQRTVKNVWIYKIDPARNLMWVKGQVPGATGNFVFIT 462
STGQRDAPGRVFKNRKMPGRMGGVQRTVKNVW+Y+IDPARNL+++KGQVPG G+FVF+
Sbjct: 218 STGQRDAPGRVFKNRKMPGRMGGVQRTVKNVWVYQIDPARNLLYLKGQVPGPQGSFVFVK 277
Query: 461 DAVYEKPDISILPFPTYFVPEDEDIDNMKPLVADLGDVDPFMITD 327
D++Y+KPDI+ LPFPTYF E E + + LVADLGD+DPFM+ D
Sbjct: 278 DSIYKKPDIAKLPFPTYFSQEGE---SEELLVADLGDIDPFMVAD 319
>gb|ZP_00053925.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 229
Score = 69.3 bits (168), Expect = 4e-11
Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = -3
Query: 641 STGQRDAPGRVFKNRKMPGRMGGVQRTVKNVWIYKIDPARNLMWVKGQVPGATGNFVFIT 462
STGQR PG+VFK +KM G MG Q T +N+ + D R L+ VKG VPG G++V +
Sbjct: 146 STGQRQDPGKVFKGKKMAGHMGDEQVTTQNLTVVSTDADRGLILVKGSVPGHEGSWVLVR 205
Query: 461 DAVYEK-PDISILPFP 417
DAV K PD +PFP
Sbjct: 206 DAVKRKLPD--GVPFP 219
>ref|NP_521140.1| PROBABLE 50S RIBOSOMAL SUBUNIT PROTEIN L3 (RRNA-BINDING
METHYLATION) [Ralstonia solanacearum]
gi|17430043|emb|CAD16728.1| PROBABLE 50S RIBOSOMAL
SUBUNIT PROTEIN L3 (RRNA-BINDING METHYLATION) [Ralstonia
solanacearum]
Length = 220
Score = 69.3 bits (168), Expect = 4e-11
Identities = 34/70 (48%), Positives = 44/70 (62%)
Frame = -3
Query: 641 STGQRDAPGRVFKNRKMPGRMGGVQRTVKNVWIYKIDPARNLMWVKGQVPGATGNFVFIT 462
S G PGRVF ++M G MG V RTV+N+ I +ID R L+ VKG VPGA FV ++
Sbjct: 148 SIGMAQDPGRVFPGKRMTGHMGDVTRTVQNLVIVRIDAERKLLLVKGAVPGAKSGFVVVS 207
Query: 461 DAVYEKPDIS 432
AV KP ++
Sbjct: 208 PAVKAKPQVA 217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 578,733,041
Number of Sequences: 1393205
Number of extensions: 12785453
Number of successful extensions: 33681
Number of sequences better than 10.0: 170
Number of HSP's better than 10.0 without gapping: 32735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33636
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
