Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003983A_C02 KMC003983A_c02
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177215.1| putative alanine aminotransferase; protein id: ... 199 3e-50
gb|AAM61453.1| putative alanine aminotransferase [Arabidopsis th... 199 3e-50
gb|AAK68842.1| alanine aminotransferase-like protein [Arabidopsi... 192 2e-48
gb|AAM22749.1| alanine aminotransferase [Deschampsia antarctica] 192 2e-48
ref|NP_564192.1| putative alanine aminotransferase; ... 192 2e-48
>ref|NP_177215.1| putative alanine aminotransferase; protein id: At1g70580.1,
supported by cDNA: 120310., supported by cDNA:
gi_14334913, supported by cDNA: gi_17104534 [Arabidopsis
thaliana] gi|25287210|pir||H96729 probable alanine
aminotransferase F5A18.24 - Arabidopsis thaliana
gi|12324762|gb|AAG52344.1|AC011663_23 putative alanine
aminotransferase; 91367-88744 [Arabidopsis thaliana]
gi|12325053|gb|AAG52480.1|AC010796_19 putative alanine
aminotransferase; 63135-65758 [Arabidopsis thaliana]
gi|14334914|gb|AAK59635.1| putative alanine
aminotransferase [Arabidopsis thaliana]
gi|17104535|gb|AAL34156.1| putative alanine
aminotransferase [Arabidopsis thaliana]
gi|24461829|gb|AAN62333.1|AF479640_1
glutamate:glyoxylate aminotransferase 2 [Arabidopsis
thaliana]
Length = 481
Score = 199 bits (505), Expect = 3e-50
Identities = 94/109 (86%), Positives = 101/109 (92%)
Frame = -1
Query: 631 RRARIMTDGFNSCRNVVCNFTEGAMYSFPQIKLPPRAIEAAKQARKAPDVYYCLKLLEAT 452
RRAR+MTDGFNSC+NVVCNFTEGAMYSFPQIKLP +AI+AAKQA K PDV+YCLKLLEAT
Sbjct: 365 RRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKLPSKAIQAAKQAGKVPDVFYCLKLLEAT 424
Query: 451 GISTVPGSGFGQKDGYFHLRTTILPLEEEMPAIMESFKNFNDEFMEQYA 305
GISTVPGSGFGQK+G FHLRTTILP EEEMP IM+SFK FNDEFM QYA
Sbjct: 425 GISTVPGSGFGQKEGVFHLRTTILPAEEEMPEIMDSFKKFNDEFMSQYA 473
>gb|AAM61453.1| putative alanine aminotransferase [Arabidopsis thaliana]
Length = 481
Score = 199 bits (505), Expect = 3e-50
Identities = 94/109 (86%), Positives = 101/109 (92%)
Frame = -1
Query: 631 RRARIMTDGFNSCRNVVCNFTEGAMYSFPQIKLPPRAIEAAKQARKAPDVYYCLKLLEAT 452
RRAR+MTDGFNSC+NVVCNFTEGAMYSFPQIKLP +AI+AAKQA K PDV+YCLKLLEAT
Sbjct: 365 RRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKLPSKAIQAAKQAGKVPDVFYCLKLLEAT 424
Query: 451 GISTVPGSGFGQKDGYFHLRTTILPLEEEMPAIMESFKNFNDEFMEQYA 305
GISTVPGSGFGQK+G FHLRTTILP EEEMP IM+SFK FNDEFM QYA
Sbjct: 425 GISTVPGSGFGQKEGVFHLRTTILPAEEEMPEIMDSFKKFNDEFMSQYA 473
>gb|AAK68842.1| alanine aminotransferase-like protein [Arabidopsis thaliana]
Length = 379
Score = 192 bits (489), Expect = 2e-48
Identities = 90/108 (83%), Positives = 99/108 (91%)
Frame = -1
Query: 631 RRARIMTDGFNSCRNVVCNFTEGAMYSFPQIKLPPRAIEAAKQARKAPDVYYCLKLLEAT 452
RRAR+MTDGFNSC+NVVCNFTEGAMYSFPQI+LP A++AAKQA K PDV+YCLKLLEAT
Sbjct: 263 RRARLMTDGFNSCKNVVCNFTEGAMYSFPQIRLPTGALQAAKQAGKVPDVFYCLKLLEAT 322
Query: 451 GISTVPGSGFGQKDGYFHLRTTILPLEEEMPAIMESFKNFNDEFMEQY 308
GISTVPGSGFGQK+G FHLRTTILP E+EMP IM+SFK FNDEFM QY
Sbjct: 323 GISTVPGSGFGQKEGVFHLRTTILPAEDEMPEIMDSFKKFNDEFMTQY 370
>gb|AAM22749.1| alanine aminotransferase [Deschampsia antarctica]
Length = 147
Score = 192 bits (489), Expect = 2e-48
Identities = 91/108 (84%), Positives = 98/108 (90%)
Frame = -1
Query: 631 RRARIMTDGFNSCRNVVCNFTEGAMYSFPQIKLPPRAIEAAKQARKAPDVYYCLKLLEAT 452
RRA+IMTDGFNSCRNVVCNFTEGAMYSFPQI+LP RA++ AK A KAPDV+YCL LLEAT
Sbjct: 34 RRAQIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDTAKSAGKAPDVFYCLMLLEAT 93
Query: 451 GISTVPGSGFGQKDGYFHLRTTILPLEEEMPAIMESFKNFNDEFMEQY 308
GISTVPGSGFGQK+G FHLRTTILP EE+MPAIM SFK FND FMEQY
Sbjct: 94 GISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMEQY 141
>ref|NP_564192.1| putative alanine aminotransferase; protein id:
At1g23310.1 [Arabidopsis thaliana]
Length = 338
Score = 192 bits (489), Expect = 2e-48
Identities = 90/108 (83%), Positives = 99/108 (91%)
Frame = -1
Query: 631 RRARIMTDGFNSCRNVVCNFTEGAMYSFPQIKLPPRAIEAAKQARKAPDVYYCLKLLEAT 452
RRAR+MTDGFNSC+NVVCNFTEGAMYSFPQI+LP A++AAKQA K PDV+YCLKLLEAT
Sbjct: 222 RRARLMTDGFNSCKNVVCNFTEGAMYSFPQIRLPTGALQAAKQAGKVPDVFYCLKLLEAT 281
Query: 451 GISTVPGSGFGQKDGYFHLRTTILPLEEEMPAIMESFKNFNDEFMEQY 308
GISTVPGSGFGQK+G FHLRTTILP E+EMP IM+SFK FNDEFM QY
Sbjct: 282 GISTVPGSGFGQKEGVFHLRTTILPAEDEMPEIMDSFKKFNDEFMTQY 329
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 557,594,100
Number of Sequences: 1393205
Number of extensions: 12166989
Number of successful extensions: 28195
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 27370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28163
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
