Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003972A_C01 KMC003972A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G84593 hypothetical protein At2g20820 [imported] - Arabidop... 108 3e-23
ref|NP_565487.2| auxin-regulated protein; protein id: At2g20820.... 108 3e-23
ref|NP_671868.1| auxin-regulated protein; protein id: At2g20820.... 64 9e-10
gb|EAA34980.1| hypothetical protein [Neurospora crassa] 39 0.031
pir||T46289 hypothetical protein DKFZp434A1010.1 - human (fragme... 35 0.77
>pir||G84593 hypothetical protein At2g20820 [imported] - Arabidopsis thaliana
Length = 112
Score = 108 bits (271), Expect = 3e-23
Identities = 52/86 (60%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = -1
Query: 497 MASLVRGAASLSRT-AISASKSPIQLLHRRNFAGAADHHGPAKVDFWKDPMSPSKWKEEH 321
MAS R A SL++ + S + RR AGAADHHG KVDFWK P +P WKEEH
Sbjct: 1 MASFARRAMSLAQIPSARISSGAASIGQRRCLAGAADHHGSTKVDFWKQPTNPGNWKEEH 60
Query: 320 FVIVSLTGWGLLIYGGYKLATGGKKE 243
FV++SL+GWGLL Y GYKLATGGKKE
Sbjct: 61 FVLISLSGWGLLFYSGYKLATGGKKE 86
>ref|NP_565487.2| auxin-regulated protein; protein id: At2g20820.1, supported by
cDNA: gi_11908097, supported by cDNA: gi_12642909,
supported by cDNA: gi_13265435, supported by cDNA:
gi_14190456, supported by cDNA: gi_15809715 [Arabidopsis
thaliana] gi|11692840|gb|AAG40023.1|AF324672_1 At2g20820
[Arabidopsis thaliana]
gi|11908098|gb|AAG41478.1|AF326896_1 unknown protein
[Arabidopsis thaliana]
gi|12642910|gb|AAK00397.1|AF339715_1 unknown protein
[Arabidopsis thaliana]
gi|14190457|gb|AAK55709.1|AF380628_1 At2g20820/F5H14.21
[Arabidopsis thaliana] gi|15809716|gb|AAL06786.1|
At2g20820/F5H14.21 [Arabidopsis thaliana]
Length = 93
Score = 108 bits (271), Expect = 3e-23
Identities = 52/86 (60%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = -1
Query: 497 MASLVRGAASLSRT-AISASKSPIQLLHRRNFAGAADHHGPAKVDFWKDPMSPSKWKEEH 321
MAS R A SL++ + S + RR AGAADHHG KVDFWK P +P WKEEH
Sbjct: 1 MASFARRAMSLAQIPSARISSGAASIGQRRCLAGAADHHGSTKVDFWKQPTNPGNWKEEH 60
Query: 320 FVIVSLTGWGLLIYGGYKLATGGKKE 243
FV++SL+GWGLL Y GYKLATGGKKE
Sbjct: 61 FVLISLSGWGLLFYSGYKLATGGKKE 86
>ref|NP_671868.1| auxin-regulated protein; protein id: At2g20820.2, supported by
cDNA: 91872. [Arabidopsis thaliana]
gi|20197690|gb|AAD20913.2| expressed protein
[Arabidopsis thaliana] gi|21617955|gb|AAM67005.1|
unknown [Arabidopsis thaliana]
Length = 102
Score = 64.3 bits (155), Expect = 9e-10
Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = -1
Query: 497 MASLVRGAASLSRT-AISASKSPIQLLHRRNFAGAADHHGPAKVDFWKDPMSPSKWKEEH 321
MAS R A SL++ + S + RR AGAADHHG KVDFWK P +P WKEEH
Sbjct: 1 MASFARRAMSLAQIPSARISSGAASIGQRRCLAGAADHHGSTKVDFWKQPTNPGNWKEEH 60
Query: 320 FV 315
++
Sbjct: 61 WI 62
>gb|EAA34980.1| hypothetical protein [Neurospora crassa]
Length = 741
Score = 39.3 bits (90), Expect = 0.031
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Frame = -1
Query: 389 HHGP--AKVDFWKDPMSPSKWKEEHFVIVS-----LTGWGLLIYGGYKLATGGKKEEKLV 231
H GP A D W + +P+ + E+ +V+VS TG+G+ + G K GG+ E LV
Sbjct: 471 HGGPQGAWQDGWSNRWNPAVFAEQGYVVVSPNPTGSTGYGMALQNGIKGQWGGRPYEDLV 530
Query: 230 KASQ*DFQHI 201
KA F+HI
Sbjct: 531 KA----FEHI 536
>pir||T46289 hypothetical protein DKFZp434A1010.1 - human (fragment)
gi|6808293|emb|CAB70821.1| hypothetical protein [Homo
sapiens]
Length = 862
Score = 34.7 bits (78), Expect = 0.77
Identities = 21/49 (42%), Positives = 26/49 (52%)
Frame = -3
Query: 528 PLYSPLNLENHGLSRPWSRISKPHCHFRFQISDPTPPPPQLRRSRRSSW 382
PLY L L G S S S P H R + SDP PP P+L + +R+ W
Sbjct: 742 PLYVNLALGPRGPSPASSSSSSPPAHPRSR-SDPGPPVPRLPQKQRAPW 789
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,256,833
Number of Sequences: 1393205
Number of extensions: 11794578
Number of successful extensions: 34308
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34209
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
