Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003961A_C01 KMC003961A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM75865.1| NADH dehydrogenase subunit 1 [Trypanosoma cruzi] ... 37 0.12
gb|AAO47332.1| NADH dehydrogenase subunit 1 [Trypanosoma cruzi] 37 0.15
gb|AAO47331.1| NADH dehydrogenase subunit 1 [Trypanosoma cruzi] 37 0.15
gb|AAM75876.1| NADH dehydrogenase subunit 1 [Trypanosoma cruzi m... 37 0.15
gb|AAM75849.1| NADH dehydrogenase subunit 1 [Trypanosoma cruzi] ... 37 0.15
>gb|AAM75865.1| NADH dehydrogenase subunit 1 [Trypanosoma cruzi]
gi|21702379|gb|AAM75868.1| NADH dehydrogenase subunit 1
[Trypanosoma cruzi]
Length = 212
Score = 37.4 bits (85), Expect = 0.12
Identities = 28/91 (30%), Positives = 44/91 (47%), Gaps = 6/91 (6%)
Frame = -1
Query: 322 LICFFFSF*FSPFPFVLL------LLHVVLVHLYYNFFSVFFLL*IVFRNKAL*F*IICL 161
L C FFS+ F P F++L +L ++ +HL N FSVF + +F + + L
Sbjct: 84 LFCIFFSWFFLPLGFIILFDKGFSILFLLSIHLVCNVFSVFLVGCFLFSSC-----FVYL 138
Query: 160 RLSCNLSFSLLLDFGLPFLDHLVDLYCLFSL 68
L FS++ + L L+ LYC + L
Sbjct: 139 ATMRTLFFSIISESAL-----LILLYCFYLL 164
>gb|AAO47332.1| NADH dehydrogenase subunit 1 [Trypanosoma cruzi]
Length = 189
Score = 37.0 bits (84), Expect = 0.15
Identities = 28/91 (30%), Positives = 44/91 (47%), Gaps = 6/91 (6%)
Frame = -1
Query: 322 LICFFFSF*FSPFPFVLL------LLHVVLVHLYYNFFSVFFLL*IVFRNKAL*F*IICL 161
L C FF + F P F++L +L ++ +HL N FSVF + +F + + L
Sbjct: 84 LFCIFFPWFFLPLGFIILFDKSFSILFLLSIHLVCNVFSVFLVGCFLFSSC-----FVYL 138
Query: 160 RLSCNLSFSLLLDFGLPFLDHLVDLYCLFSL 68
L FS++ + L L+ LYCL+ L
Sbjct: 139 ATMRTLFFSIISESAL-----LILLYCLYLL 164
>gb|AAO47331.1| NADH dehydrogenase subunit 1 [Trypanosoma cruzi]
Length = 189
Score = 37.0 bits (84), Expect = 0.15
Identities = 28/91 (30%), Positives = 44/91 (47%), Gaps = 6/91 (6%)
Frame = -1
Query: 322 LICFFFSF*FSPFPFVLL------LLHVVLVHLYYNFFSVFFLL*IVFRNKAL*F*IICL 161
L C FF + F P F++L +L ++ +HL N FSVF + +F + + L
Sbjct: 84 LFCIFFPWFFLPLGFIILFDKSFSILFLLSIHLVCNVFSVFLVGCFLFSSC-----FVYL 138
Query: 160 RLSCNLSFSLLLDFGLPFLDHLVDLYCLFSL 68
L FS++ + L L+ LYCL+ L
Sbjct: 139 ATMRTLFFSIISESAL-----LILLYCLYLL 164
>gb|AAM75876.1| NADH dehydrogenase subunit 1 [Trypanosoma cruzi marinkellei]
gi|21702400|gb|AAM75877.1| NADH dehydrogenase subunit 1
[Trypanosoma cruzi marinkellei]
Length = 212
Score = 37.0 bits (84), Expect = 0.15
Identities = 28/91 (30%), Positives = 44/91 (47%), Gaps = 6/91 (6%)
Frame = -1
Query: 322 LICFFFSF*FSPFPFVLL------LLHVVLVHLYYNFFSVFFLL*IVFRNKAL*F*IICL 161
L C FF + F P F++L +L ++ +HL N FSVF + +F + + L
Sbjct: 84 LFCIFFPWFFLPLGFIILFDKGFSILFLLSIHLVCNVFSVFLVGCFLFSSC-----FVYL 138
Query: 160 RLSCNLSFSLLLDFGLPFLDHLVDLYCLFSL 68
L FS++ + L L+ LYCL+ L
Sbjct: 139 ATMRTLFFSIISESAL-----LILLYCLYLL 164
>gb|AAM75849.1| NADH dehydrogenase subunit 1 [Trypanosoma cruzi]
gi|21702333|gb|AAM75850.1| NADH dehydrogenase subunit 1
[Trypanosoma cruzi] gi|21702337|gb|AAM75852.1| NADH
dehydrogenase subunit 1 [Trypanosoma cruzi]
gi|21702345|gb|AAM75855.1| NADH dehydrogenase subunit 1
[Trypanosoma cruzi] gi|21702348|gb|AAM75856.1| NADH
dehydrogenase subunit 1 [Trypanosoma cruzi]
gi|21702350|gb|AAM75857.1| NADH dehydrogenase subunit 1
[Trypanosoma cruzi] gi|21702352|gb|AAM75858.1| NADH
dehydrogenase subunit 1 [Trypanosoma cruzi]
gi|21702354|gb|AAM75859.1| NADH dehydrogenase subunit 1
[Trypanosoma cruzi] gi|21702356|gb|AAM75860.1| NADH
dehydrogenase subunit 1 [Trypanosoma cruzi]
Length = 212
Score = 37.0 bits (84), Expect = 0.15
Identities = 28/91 (30%), Positives = 44/91 (47%), Gaps = 6/91 (6%)
Frame = -1
Query: 322 LICFFFSF*FSPFPFVLL------LLHVVLVHLYYNFFSVFFLL*IVFRNKAL*F*IICL 161
L C FF + F P F++L +L ++ +HL N FSVF + +F + + L
Sbjct: 84 LFCIFFPWFFLPLGFIILFDKSFSILFLLSIHLVCNVFSVFLVGCFLFSSC-----FVYL 138
Query: 160 RLSCNLSFSLLLDFGLPFLDHLVDLYCLFSL 68
L FS++ + L L+ LYCL+ L
Sbjct: 139 ATMRTLFFSIISESAL-----LILLYCLYLL 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,934,117
Number of Sequences: 1393205
Number of extensions: 8469506
Number of successful extensions: 24435
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 22606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24275
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
