Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003957A_C01 KMC003957A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87189.1|AF480497_17 putative amino acid transport protein ... 70 3e-11
gb|AAK97680.1| AT5g23810/MRO11_15 [Arabidopsis thaliana] gi|2350... 65 7e-10
ref|NP_197770.1| amino acid transporter; protein id: At5g23810.1... 65 7e-10
emb|CAC51423.1| amino acid permease AAP1 [Vicia faba var. minor] 64 1e-09
gb|AAK33098.1| amino acid transporter [Glycine max] 61 9e-09
>gb|AAL87189.1|AF480497_17 putative amino acid transport protein AAP2 [Oryza sativa (japonica
cultivar-group)]
Length = 469
Score = 69.7 bits (169), Expect = 3e-11
Identities = 26/68 (38%), Positives = 42/68 (61%)
Frame = -2
Query: 596 NQILGVLGSISFWPYTIYFPVALYLSRSSTDAWTAKWIMLRTFSIFGFGFGLFTLIGCIR 417
N++LGVLG++ FWP IY PV +Y + WT +W L+ FS+ F G F +G +
Sbjct: 402 NEVLGVLGALVFWPLAIYLPVEMYCVQRRISPWTPRWAALQAFSVVCFVVGTFAFVGSVE 461
Query: 416 GIVTEKIG 393
G++ +++G
Sbjct: 462 GVIRKRLG 469
>gb|AAK97680.1| AT5g23810/MRO11_15 [Arabidopsis thaliana]
gi|23505867|gb|AAN28793.1| At5g23810/MRO11_15
[Arabidopsis thaliana]
Length = 303
Score = 65.1 bits (157), Expect = 7e-10
Identities = 27/68 (39%), Positives = 43/68 (62%)
Frame = -2
Query: 596 NQILGVLGSISFWPYTIYFPVALYLSRSSTDAWTAKWIMLRTFSIFGFGFGLFTLIGCIR 417
N++LGV+G+++FWP +YFPV + + + +WT W++LR FS L +L+G I
Sbjct: 236 NEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIY 295
Query: 416 GIVTEKIG 393
G+V K G
Sbjct: 296 GLVGAKFG 303
>ref|NP_197770.1| amino acid transporter; protein id: At5g23810.1, supported by cDNA:
gi_15529170 [Arabidopsis thaliana]
gi|10176848|dbj|BAB10054.1| amino acid transporter
[Arabidopsis thaliana]
Length = 467
Score = 65.1 bits (157), Expect = 7e-10
Identities = 27/68 (39%), Positives = 43/68 (62%)
Frame = -2
Query: 596 NQILGVLGSISFWPYTIYFPVALYLSRSSTDAWTAKWIMLRTFSIFGFGFGLFTLIGCIR 417
N++LGV+G+++FWP +YFPV + + + +WT W++LR FS L +L+G I
Sbjct: 400 NEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIY 459
Query: 416 GIVTEKIG 393
G+V K G
Sbjct: 460 GLVGAKFG 467
>emb|CAC51423.1| amino acid permease AAP1 [Vicia faba var. minor]
Length = 475
Score = 63.9 bits (154), Expect = 1e-09
Identities = 23/65 (35%), Positives = 39/65 (59%)
Frame = -2
Query: 596 NQILGVLGSISFWPYTIYFPVALYLSRSSTDAWTAKWIMLRTFSIFGFGFGLFTLIGCIR 417
N +LG++G+ FWP T+YFPV +Y+ + W+ KWI ++T S+ F + +G +
Sbjct: 400 NDVLGLIGAAGFWPLTVYFPVEMYIKQKKITKWSYKWISMQTLSVICFVVSVVAFVGSVS 459
Query: 416 GIVTE 402
IV +
Sbjct: 460 SIVVD 464
>gb|AAK33098.1| amino acid transporter [Glycine max]
Length = 513
Score = 61.2 bits (147), Expect = 9e-09
Identities = 22/65 (33%), Positives = 39/65 (59%)
Frame = -2
Query: 596 NQILGVLGSISFWPYTIYFPVALYLSRSSTDAWTAKWIMLRTFSIFGFGFGLFTLIGCIR 417
N ++G+LG+ FWP T+YFP+ +Y+S+ WT++W+ L+ S L +G +
Sbjct: 438 NDVVGILGAFGFWPLTVYFPIDMYISQKKIGRWTSRWLGLQLLSASCLIISLLAAVGSMA 497
Query: 416 GIVTE 402
G+V +
Sbjct: 498 GVVLD 502
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,736,627
Number of Sequences: 1393205
Number of extensions: 9926511
Number of successful extensions: 24396
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 23657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24372
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
