Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003953A_C01 KMC003953A_c01
(689 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65510.1| 60S ribosomal protein L4-B (L1) [Arabidopsis thal... 211 7e-60
ref|NP_187574.1| putative 60S ribosomal protein L1; protein id: ... 211 7e-60
ref|NP_195907.1| 60S ribosomal protein - like; protein id: At5g0... 205 4e-58
gb|AAK32901.1|AF367314_1 AT5g02870/F9G14_180 [Arabidopsis thalia... 205 4e-58
sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1) gi|4887131|gb|... 201 2e-57
>gb|AAM65510.1| 60S ribosomal protein L4-B (L1) [Arabidopsis thaliana]
Length = 406
Score = 211 bits (537), Expect(2) = 7e-60
Identities = 106/128 (82%), Positives = 120/128 (92%)
Frame = -3
Query: 687 RFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLARIINSDEVQSVVRPIQK 508
RFVIWTKSAFEKL+SIYGSF+KPSEKKKGY+LPR+KMVN+DLARIINSDE+QSVV PI+K
Sbjct: 254 RFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKK 313
Query: 507 DVKRATLKKNPLKNLNVMLRLNPYAKTAQRMALLAEAQRLQAKKEKLDKMRKIVSKEEAS 328
D KRA LKKNPLKNLNVML+LNPYAKTA+RM+LLAEAQR++AKKEKL K RK V+KEEA
Sbjct: 314 DAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEAL 373
Query: 327 AITAAGQS 304
AI AAG+S
Sbjct: 374 AIKAAGKS 381
Score = 42.0 bits (97), Expect(2) = 7e-60
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -2
Query: 283 SDSDYTEFDNFSKWLGVSQ 227
SDSDYTEFDNF+KWLG SQ
Sbjct: 388 SDSDYTEFDNFTKWLGASQ 406
>ref|NP_187574.1| putative 60S ribosomal protein L1; protein id: At3g09630.1,
supported by cDNA: 39947., supported by cDNA:
gi_15982714 [Arabidopsis thaliana]
gi|17369604|sp|Q9SF40|RL4B_ARATH 60S ribosomal protein
L4-2 (L1) gi|6682241|gb|AAF23293.1|AC016661_18 putative
60S ribosomal protein L1 [Arabidopsis thaliana]
gi|15982715|gb|AAL09727.1| AT3g09630/F11F8_22
[Arabidopsis thaliana] gi|27311665|gb|AAO00798.1|
putative 60S ribosomal protein L1 [Arabidopsis thaliana]
Length = 406
Score = 211 bits (537), Expect(2) = 7e-60
Identities = 106/128 (82%), Positives = 120/128 (92%)
Frame = -3
Query: 687 RFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLARIINSDEVQSVVRPIQK 508
RFVIWTKSAFEKL+SIYGSF+KPSEKKKGY+LPR+KMVN+DLARIINSDE+QSVV PI+K
Sbjct: 254 RFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKK 313
Query: 507 DVKRATLKKNPLKNLNVMLRLNPYAKTAQRMALLAEAQRLQAKKEKLDKMRKIVSKEEAS 328
D KRA LKKNPLKNLNVML+LNPYAKTA+RM+LLAEAQR++AKKEKL K RK V+KEEA
Sbjct: 314 DAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEAL 373
Query: 327 AITAAGQS 304
AI AAG+S
Sbjct: 374 AIKAAGKS 381
Score = 42.0 bits (97), Expect(2) = 7e-60
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -2
Query: 283 SDSDYTEFDNFSKWLGVSQ 227
SDSDYTEFDNF+KWLG SQ
Sbjct: 388 SDSDYTEFDNFTKWLGASQ 406
>ref|NP_195907.1| 60S ribosomal protein - like; protein id: At5g02870.1, supported by
cDNA: gi_13605830, supported by cDNA: gi_15450797,
supported by cDNA: gi_16649032, supported by cDNA:
gi_17064751, supported by cDNA: gi_20260071 [Arabidopsis
thaliana] gi|20143905|sp|P49691|RL4A_ARATH 60S ribosomal
protein L4-1 (L1) gi|11276668|pir||T48308 60S ribosomal
protein-like - Arabidopsis thaliana
gi|7413562|emb|CAB86041.1| 60S ribosomal protein-like
[Arabidopsis thaliana] gi|15450798|gb|AAK96670.1| 60S
ribosomal protein-like [Arabidopsis thaliana]
gi|16649033|gb|AAL24368.1| 60S ribosomal protein-like
[Arabidopsis thaliana] gi|17064752|gb|AAL32530.1| 60S
ribosomal protein-like [Arabidopsis thaliana]
gi|20260072|gb|AAM13383.1| 60S ribosomal protein-like
[Arabidopsis thaliana] gi|21387109|gb|AAM47958.1| 60S
ribosomal protein-like protein [Arabidopsis thaliana]
gi|22530964|gb|AAM96986.1| 60S ribosomal protein-like
[Arabidopsis thaliana] gi|25083642|gb|AAN72099.1| 60S
ribosomal protein-like [Arabidopsis thaliana]
Length = 407
Score = 205 bits (522), Expect(2) = 4e-58
Identities = 105/135 (77%), Positives = 121/135 (88%), Gaps = 4/135 (2%)
Frame = -3
Query: 687 RFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLARIINSDEVQSVVRPIQK 508
RFVIWTKSAFEKL+SIYGSF+KPSEKKKGY+LPR+KMVN+DLARIINSDEVQSVV PI+
Sbjct: 255 RFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKD 314
Query: 507 DVKRATLKKNPLKNLNVMLRLNPYAKTAQRMALLAEAQRLQAKKEKLDKMRKIVSKEEAS 328
KRA LKKNPLKNLNVM +LNPYAKTA+RM+LLAEA R++AKKEKL+K RK+V+KEEA
Sbjct: 315 GSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQ 374
Query: 327 AITAAG----QSMVS 295
AI AAG Q+M+S
Sbjct: 375 AIKAAGKAWYQTMIS 389
Score = 42.0 bits (97), Expect(2) = 4e-58
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -2
Query: 283 SDSDYTEFDNFSKWLGVSQ 227
SDSDYTEFDNF+KWLG SQ
Sbjct: 389 SDSDYTEFDNFTKWLGASQ 407
>gb|AAK32901.1|AF367314_1 AT5g02870/F9G14_180 [Arabidopsis thaliana]
gi|22137186|gb|AAM91438.1| AT5g02870/F9G14_180
[Arabidopsis thaliana]
Length = 307
Score = 205 bits (522), Expect(2) = 4e-58
Identities = 105/135 (77%), Positives = 121/135 (88%), Gaps = 4/135 (2%)
Frame = -3
Query: 687 RFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLARIINSDEVQSVVRPIQK 508
RFVIWTKSAFEKL+SIYGSF+KPSEKKKGY+LPR+KMVN+DLARIINSDEVQSVV PI+
Sbjct: 155 RFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKD 214
Query: 507 DVKRATLKKNPLKNLNVMLRLNPYAKTAQRMALLAEAQRLQAKKEKLDKMRKIVSKEEAS 328
KRA LKKNPLKNLNVM +LNPYAKTA+RM+LLAEA R++AKKEKL+K RK+V+KEEA
Sbjct: 215 GSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQ 274
Query: 327 AITAAG----QSMVS 295
AI AAG Q+M+S
Sbjct: 275 AIKAAGKAWYQTMIS 289
Score = 42.0 bits (97), Expect(2) = 4e-58
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -2
Query: 283 SDSDYTEFDNFSKWLGVSQ 227
SDSDYTEFDNF+KWLG SQ
Sbjct: 289 SDSDYTEFDNFTKWLGASQ 307
>sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1) gi|4887131|gb|AAD32206.1|AF134732_1
60S ribosomal protein L1 [Prunus armeniaca]
Length = 408
Score = 201 bits (512), Expect(2) = 2e-57
Identities = 105/135 (77%), Positives = 119/135 (87%), Gaps = 4/135 (2%)
Frame = -3
Query: 687 RFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLARIINSDEVQSVVRPIQK 508
RFV+WTKSAFEKLDSIYGSFDK SEKK GY+LPRSKMVN+DLARIINSDEVQSVV PIQ+
Sbjct: 256 RFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQE 315
Query: 507 DVKRATLKKNPLKNLNVMLRLNPYAKTAQRMALLAEAQRLQAKKEKLDKMRKIVSKEEAS 328
KRA LKKNPL+ LN ML+LNPYAKTA+RM+LLAEA+R++AKKEKLDK RK +SKEEAS
Sbjct: 316 GSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEAS 375
Query: 327 AITAAG----QSMVS 295
I AAG Q+M+S
Sbjct: 376 TIKAAGKAWYQTMIS 390
Score = 43.5 bits (101), Expect(2) = 2e-57
Identities = 18/19 (94%), Positives = 19/19 (99%)
Frame = -2
Query: 283 SDSDYTEFDNFSKWLGVSQ 227
SDSDYTEFDNF+KWLGVSQ
Sbjct: 390 SDSDYTEFDNFTKWLGVSQ 408
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,929,807
Number of Sequences: 1393205
Number of extensions: 11484128
Number of successful extensions: 32367
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 30866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32294
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
