Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003951A_C01 KMC003951A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07080 shock protein SRC2 - soybean gi|2055230|dbj|BAA19769... 249 2e-65
pir||T51602 shock protein SRC2 homolog [imported] - Arabidopsis ... 139 2e-32
ref|NP_563835.1| expressed protein; protein id: At1g09070.1, sup... 139 2e-32
ref|NP_188272.1| unknown protein; protein id: At3g16510.1 [Arabi... 115 3e-25
dbj|BAB64181.1| P0492G09.1 [Oryza sativa (japonica cultivar-grou... 114 9e-25
>pir||T07080 shock protein SRC2 - soybean gi|2055230|dbj|BAA19769.1| SRC2
[Glycine max]
Length = 290
Score = 249 bits (636), Expect = 2e-65
Identities = 127/174 (72%), Positives = 146/174 (82%), Gaps = 4/174 (2%)
Frame = +1
Query: 88 MDYRKLELNIISAKDLKDVNLFSKMDVYAVVSVSGDPLHPQTATTHVHKDSGTSPTWNFP 267
M+YR LELNIISAKD+K+VNLFSKMDVYA VS+SGDPLHPQ ATTHVHKD+G++PTWN+P
Sbjct: 3 MEYRTLELNIISAKDIKNVNLFSKMDVYAAVSLSGDPLHPQGATTHVHKDAGSNPTWNYP 62
Query: 268 VKFVVNETLAQQNRLSLEVKLLSDRTLAGDTVIGTVHIPIKELLDNPGGGGGGDSFRQVS 447
VKF VNE+LA++NRLSLE+KL+SDRTL GDTVIGTVH+P++ELLDNP G SFRQVS
Sbjct: 63 VKFSVNESLAKENRLSLEIKLISDRTL-GDTVIGTVHVPLRELLDNP---GDDSSFRQVS 118
Query: 448 YQVKRSSGKAKGTFNFSYKFGEKVDAPATKAXKT----HEPVMAYPPPVAGSSS 597
YQV + S K+KG+ NFSYKFGE V APA K K EPVMAYPP AGSSS
Sbjct: 119 YQVMKQSRKSKGSLNFSYKFGEHVPAPAAKTPKAAKAGQEPVMAYPPAGAGSSS 172
>pir||T51602 shock protein SRC2 homolog [imported] - Arabidopsis thaliana
gi|3426060|emb|CAA07573.1| src2-like protein
[Arabidopsis thaliana]
Length = 324
Score = 139 bits (351), Expect = 2e-32
Identities = 81/191 (42%), Positives = 107/191 (55%), Gaps = 21/191 (10%)
Frame = +1
Query: 88 MDYRKLELNIISAKDLKDVNLFSKMDVYAVVSVSGDPLHPQTATTHVHKDSGTSPTWNFP 267
M+ R L+L IISA+DLKDV L K D+YAVVS++GD Q T V KD GT P W
Sbjct: 1 MECRSLDLTIISAEDLKDVQLIGKQDLYAVVSINGDARTKQK--TKVDKDCGTKPKWKHQ 58
Query: 268 VKFVVNETLAQQNRLSLEVKLLSDRTLAGDTVIGTVHIPIKELLDNPGGGGGGDSFRQVS 447
+K V++ A+ NRL+L ++++DR +AGD +G V +P+KELLD GD + V+
Sbjct: 59 MKLTVDDAAARDNRLTLVFEIVADRPIAGDKPVGEVSVPVKELLDQ----NKGDEEKTVT 114
Query: 448 YQVKRSSGKAKGTFNFSYKFGEK---------------------VDAPATKAXKTHEPVM 564
Y V+ +GKAKG+ FS+KFGEK +D P T H
Sbjct: 115 YAVRLPNGKAKGSLKFSFKFGEKYTYGSSSGPHAPVPSAMDHKTMDQPVTAYPPGHGAPS 174
Query: 565 AYPPPVAGSSS 597
AYP P AG SS
Sbjct: 175 AYPAPPAGPSS 185
>ref|NP_563835.1| expressed protein; protein id: At1g09070.1, supported by cDNA:
gi_15010557 [Arabidopsis thaliana]
gi|25402513|pir||G86222 hypothetical protein [imported]
- Arabidopsis thaliana gi|1922937|gb|AAB70401.1| Similar
to Glycine SRC2 (gb|AB000130). ESTs
gb|H76869,gb|T21700,gb|ATTS5089 come from this gene.
[Arabidopsis thaliana] gi|15010558|gb|AAK73938.1|
At1g09070/F7G19_6 [Arabidopsis thaliana]
gi|22655398|gb|AAM98291.1| At1g09070/F7G19_6
[Arabidopsis thaliana]
Length = 324
Score = 139 bits (351), Expect = 2e-32
Identities = 81/191 (42%), Positives = 107/191 (55%), Gaps = 21/191 (10%)
Frame = +1
Query: 88 MDYRKLELNIISAKDLKDVNLFSKMDVYAVVSVSGDPLHPQTATTHVHKDSGTSPTWNFP 267
M+ R L+L IISA+DLKDV L K D+YAVVS++GD Q T V KD GT P W
Sbjct: 1 MECRSLDLTIISAEDLKDVQLIGKQDLYAVVSINGDARTKQK--TKVDKDCGTKPKWKHQ 58
Query: 268 VKFVVNETLAQQNRLSLEVKLLSDRTLAGDTVIGTVHIPIKELLDNPGGGGGGDSFRQVS 447
+K V++ A+ NRL+L ++++DR +AGD +G V +P+KELLD GD + V+
Sbjct: 59 MKLTVDDAAARDNRLTLVFEIVADRPIAGDKPVGEVSVPVKELLDQ----NKGDEEKTVT 114
Query: 448 YQVKRSSGKAKGTFNFSYKFGEK---------------------VDAPATKAXKTHEPVM 564
Y V+ +GKAKG+ FS+KFGEK +D P T H
Sbjct: 115 YAVRLPNGKAKGSLKFSFKFGEKYTYGSSSGPHAPVPSAMDHKTMDQPVTAYPPGHGAPS 174
Query: 565 AYPPPVAGSSS 597
AYP P AG SS
Sbjct: 175 AYPAPPAGPSS 185
>ref|NP_188272.1| unknown protein; protein id: At3g16510.1 [Arabidopsis thaliana]
gi|9279650|dbj|BAB01150.1| contains similarity to SRC2
protein~gene_id:MDC8.14 [Arabidopsis thaliana]
Length = 360
Score = 115 bits (289), Expect = 3e-25
Identities = 72/169 (42%), Positives = 99/169 (57%), Gaps = 6/169 (3%)
Frame = +1
Query: 103 LELNIISAKDLKDVNLFSKMDVYAVVSVSGDPLHP-QTATTHVHKDSGTSPTWNFPVKFV 279
LELN+ SAKDL++VNL +KMDVYAVV ++GD T + + + PTWN VKF
Sbjct: 6 LELNVYSAKDLENVNLITKMDVYAVVWITGDDSRKNHKEKTPIDRTGESEPTWNHTVKFS 65
Query: 280 VNETLAQQNRLSLEVKLLSDRTLAGDTVIGTVHIPIKELL---DNPGGGGGGDS-FRQVS 447
V++ LA + RL+L VKL+ DR + GD +G V +P+ ELL +P G G R V+
Sbjct: 66 VDQRLAHEGRLTLVVKLVCDR-IFGDKDLGEVQVPVLELLHGSSSPSSNGDGQGMMRFVT 124
Query: 448 YQVKRSSGKAKGTFNFSYKFGEKVDAPATKAXK-THEPVMAYPPPVAGS 591
YQV+ GK +G+ FSY+F D+P K + V PPV+ S
Sbjct: 125 YQVRTPFGKGQGSLTFSYRF----DSPTFKPDQPVSSHVFHQDPPVSSS 169
>dbj|BAB64181.1| P0492G09.1 [Oryza sativa (japonica cultivar-group)]
gi|21104658|dbj|BAB93249.1| P0423A12.20 [Oryza sativa
(japonica cultivar-group)]
Length = 358
Score = 114 bits (285), Expect = 9e-25
Identities = 81/190 (42%), Positives = 100/190 (52%), Gaps = 24/190 (12%)
Frame = +1
Query: 88 MDYRKLELNIISAKDLKDVNLFSKMDVYAVVSVSGDPLHPQTATTHVHKDSGTSPTWN-F 264
M R LEL +ISAKDLKDVNL SKM+VYAVVS+SGD Q T + G +P WN
Sbjct: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGDRRSRQRIAT--DRAGGRNPAWNAA 58
Query: 265 PVKFVVNETLAQQNRLSLEVKLLSDRTLAGDTVIGTVHIPIKELLDNPGGGGGGDSFRQV 444
P++F V + A SL V L ++R L GD +G VHIP+ ELL G G + V
Sbjct: 59 PLRFTVPASGAG----SLHVLLRAERAL-GDRDVGEVHIPLSELLS--GAPDGAVPAKFV 111
Query: 445 SYQVKR-SSGKAKGTFNFSYKFGEKVDA----------------------PATKAXKTHE 555
SYQV++ SSGK +G NFSYK GE + P+ A +
Sbjct: 112 SYQVRKISSGKPQGVLNFSYKIGEVTQSGSYPGASPPVAYGQAPPAPAYPPSAAAAAAYP 171
Query: 556 PVMAYPPPVA 585
P YPPP A
Sbjct: 172 PQSTYPPPTA 181
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 565,683,972
Number of Sequences: 1393205
Number of extensions: 14560534
Number of successful extensions: 122218
Number of sequences better than 10.0: 887
Number of HSP's better than 10.0 without gapping: 73783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111680
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
