Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003941A_C01 KMC003941A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181988.1| unknown protein; protein id: At2g44600.1, suppo... 72 5e-12
ref|NP_191579.1| putative protein; protein id: At3g60200.1, supp... 68 7e-11
gb|AAL79696.1|AC087599_15 hypothetical protein [Oryza sativa] 42 0.004
ref|XP_145489.1| similar to hypothetical protein FLJ30803 [Homo ... 37 0.17
ref|NP_147539.1| hypothetical protein [Aeropyrum pernix] gi|7516... 30 0.27
>ref|NP_181988.1| unknown protein; protein id: At2g44600.1, supported by cDNA:
gi_18491246 [Arabidopsis thaliana]
gi|7459477|pir||T01587 hypothetical protein At2g44600
[imported] - Arabidopsis thaliana
gi|3341680|gb|AAC27462.1| unknown protein [Arabidopsis
thaliana] gi|18491247|gb|AAL69448.1| At2g44600/F16B22.9
[Arabidopsis thaliana]
Length = 313
Score = 71.6 bits (174), Expect = 5e-12
Identities = 50/113 (44%), Positives = 60/113 (52%), Gaps = 15/113 (13%)
Frame = -1
Query: 492 RDRSPPGCSS------ESSPQRRHQTPTVARRSRFCPA----GKSLTNIAFCLSPLVRAS 343
R SP G S+ E SP R +TP + R A G+S++ +AFCLSPLVRA
Sbjct: 201 RGMSPAGDSTTNDESVEESPGRLRRTPVMGTPGRKKTATIGIGRSVSGMAFCLSPLVRAK 260
Query: 342 PN--RRWGHKGLAQ-ELSGGLGGPQ--HISTAVSYCANRSRKLADFGRVAHNR 199
PN W K SG L P H+STA S+C NRS+KL D GRV H R
Sbjct: 261 PNCSSNWKAKFPPDFGYSGELKSPAKPHLSTAASFCGNRSKKLVDLGRVDHRR 313
>ref|NP_191579.1| putative protein; protein id: At3g60200.1, supported by cDNA:
gi_17979088 [Arabidopsis thaliana]
gi|11280555|pir||T47844 hypothetical protein T2O9.180 -
Arabidopsis thaliana gi|7076773|emb|CAB75935.1| putative
protein [Arabidopsis thaliana]
gi|17979089|gb|AAL49812.1| unknown protein [Arabidopsis
thaliana] gi|21436193|gb|AAM51384.1| unknown protein
[Arabidopsis thaliana]
Length = 305
Score = 67.8 bits (164), Expect = 7e-11
Identities = 45/101 (44%), Positives = 53/101 (51%), Gaps = 8/101 (7%)
Frame = -1
Query: 477 PGCSSESSPQRRHQ--TPTVARRSRFCPAGKSLTNIAFCLSPLVRASPNRRWGHKGLAQE 304
P S+ES + R T T RR GKS++ +AFCLSPLVRASPN + K
Sbjct: 205 PEQSAESIEELRRTPATKTPGRRKIAMGIGKSMSGMAFCLSPLVRASPNCPFKRKMRFPS 264
Query: 303 LSGGLG------GPQHISTAVSYCANRSRKLADFGRVAHNR 199
G G HIS A S+CANRS+KL D GRV R
Sbjct: 265 EFGNSGEVTAVPEKPHISAAASFCANRSKKLVDLGRVDRRR 305
>gb|AAL79696.1|AC087599_15 hypothetical protein [Oryza sativa]
Length = 292
Score = 42.0 bits (97), Expect = 0.004
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Frame = -1
Query: 507 PKIDGRDRSPPGCSSES------SPQRRHQTPTVARRSRFCPAGKSLTNIAFCLSPLVRA 346
P +D SP G ++ S SP R+H+ R + +G ++ A CLSPLVR
Sbjct: 187 PPLDEAPDSPGGSTTSSWWFPSPSPARQHRR----RHTGVGASGDGISGFAVCLSPLVRP 242
Query: 345 SPNRRWGHKGLAQELSGGLGGPQHIST----AVSYCANRSRKLADFGR 214
+ G + LG + A S+ N SRKLAD GR
Sbjct: 243 TSGGGGGRRRCQPPDPSPLGDTHRRNLSAGGAASFGRNTSRKLADMGR 290
>ref|XP_145489.1| similar to hypothetical protein FLJ30803 [Homo sapiens] [Mus
musculus]
Length = 297
Score = 36.6 bits (83), Expect = 0.17
Identities = 26/85 (30%), Positives = 35/85 (40%), Gaps = 9/85 (10%)
Frame = +1
Query: 208 GNSSEICKLP*PVSTIRNRSGYMLGPTQTSTQFLSQPLMAPP---------PVRTRPNQR 360
G+++ +C LP T S M GP ++ + L P APP P R RP QR
Sbjct: 171 GSATSLCLLP-SEETSGEESRAMTGPRRSRSGALGPPTSAPPTLALVPGGAPARPRPQQR 229
Query: 361 AQAKRDVR*AFPGRAKPRPPRHRRR 435
D F + PR R +R
Sbjct: 230 YSFDGDYGALFQSHSYPRRARRTKR 254
>ref|NP_147539.1| hypothetical protein [Aeropyrum pernix] gi|7516066|pir||A72678
hypothetical protein APE0845 - Aeropyrum pernix (strain
K1) gi|5104510|dbj|BAA79825.1| 128aa long hypothetical
protein [Aeropyrum pernix]
Length = 128
Score = 29.6 bits (65), Expect(2) = 0.27
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = +2
Query: 395 PAGQNRDRRATVGVWCRR----C-GEDSDEHPGGDLSRPSI 502
P G+ R RR+ G W RR C G PGG LS P +
Sbjct: 59 PGGRGRPRRSRPGRWRRRRGKLCPGSPRSSGPGGPLSGPGV 99
Score = 25.4 bits (54), Expect(2) = 0.27
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = +3
Query: 306 PEPTPYGPTSGSDSPEP 356
P P P G +SG+ SP+P
Sbjct: 30 PYPAPCGTSSGASSPQP 46
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,237,079
Number of Sequences: 1393205
Number of extensions: 11975756
Number of successful extensions: 55173
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 49878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54769
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
