Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003934A_C01 KMC003934A_c01
(433 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_239477.1| hypothetical protein XP_239477 [Rattus norvegicus] 30 5.3
gb|AAM46758.1|AF457116_1 maturase K [Saxegothaea conspicua] 30 6.9
>ref|XP_239477.1| hypothetical protein XP_239477 [Rattus norvegicus]
Length = 276
Score = 30.4 bits (67), Expect = 5.3
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -1
Query: 430 PNQDIDIHNSKDLGLMHQMWVLSRINKRGS*GQLLLNSWYYQLYLSKYFRIIYTVASH 257
P Q +H + G H++ I + G+ L+N YY+ Y KY+R Y H
Sbjct: 178 PIQPGSLHVDSEKGKKHKL----TIRRYSQSGEALVNMEYYRKYYRKYYRKYYRKYDH 231
>gb|AAM46758.1|AF457116_1 maturase K [Saxegothaea conspicua]
Length = 509
Score = 30.0 bits (66), Expect = 6.9
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 266 DCIDYTKIFTQI*LIIPTVEQKLPLASSLVDPAQHPHLVHQSQIFRIMNVYI 421
+C++ K F I + P +E+KLP S+ + + P+ VH + RI +I
Sbjct: 117 ECMNGWKSFRSIHCVFPLMEEKLP-HSNYISDIRLPYAVHPEILVRIFRRWI 167
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 339,125,089
Number of Sequences: 1393205
Number of extensions: 6124298
Number of successful extensions: 10042
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10041
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 6789548448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
