Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003932A_C01 KMC003932A_c01
(390 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T18494 hypothetical protein C0790w - malaria parasite (Plas... 30 5.6
ref|NP_473291.1| hypothetical protein [Plasmodium falciparum 3D7... 30 5.6
ref|NP_055387.1| LATS, large tumor suppressor, homolog 2; LATS (... 30 7.3
pir||A45885 MHC class I histocompatibility antigen Thy19.4 (non... 30 9.6
ref|NP_465374.1| similar to metal cations ABC transporter, ATP-b... 30 9.6
>pir||T18494 hypothetical protein C0790w - malaria parasite (Plasmodium
falciparum)
Length = 689
Score = 30.4 bits (67), Expect = 5.6
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = -1
Query: 114 YKLE*ENCLSTFAVASSLVEFNKIKASIVLMYQW 13
Y L+ +NCL+ + + ++ F+KIK + +++Y++
Sbjct: 400 YMLKEQNCLNPYFIEKVILSFHKIKINDIVLYEY 433
>ref|NP_473291.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7768293|emb|CAB11133.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 710
Score = 30.4 bits (67), Expect = 5.6
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = -1
Query: 114 YKLE*ENCLSTFAVASSLVEFNKIKASIVLMYQW 13
Y L+ +NCL+ + + ++ F+KIK + +++Y++
Sbjct: 421 YMLKEQNCLNPYFIEKVILSFHKIKINDIVLYEY 454
>ref|NP_055387.1| LATS, large tumor suppressor, homolog 2; LATS (large tumor
suppressor, Drosophila) homolog 2 [Homo sapiens]
gi|8886764|gb|AAF80561.1|AF207547_1 serine/threonine
kinase KPM [Homo sapiens]
Length = 1088
Score = 30.0 bits (66), Expect = 7.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 73 NCKS*ETILSLQLISRKMHIRCMLTNLQSNYNQIIKHVIRKSYYT 207
NC+ + + +L+ +RK H RC+ +L N I V+ + YT
Sbjct: 847 NCRCGDRLKTLEQRARKQHQRCLAHSLVGTPNYIAPEVLLRKGYT 891
>pir||A45885 MHC class I histocompatibility antigen Thy19.4 (non-classical)
alpha chain precursor - mouse gi|387479|gb|AAA39689.1|
MHC Thy19.4
Length = 346
Score = 29.6 bits (65), Expect = 9.6
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
Frame = +3
Query: 60 QVNLQLQKLRD------------NSLTPAYIEEDAHQMHAYKSAI*LQSDYQTCNQKI 197
Q+ + QKLRD +T YI D H +HAY+ DY T N+ +
Sbjct: 104 QIRVYFQKLRDYYNQSQNSSHTIQRMTGCYIGPDGHLLHAYRQFGYDGQDYLTLNEDL 161
>ref|NP_465374.1| similar to metal cations ABC transporter, ATP-binding proteins
[Listeria monocytogenes EGD-e]
gi|20455052|sp|Q8Y651|MNTB_LISMO Manganese transport
system ATP-binding protein mntB gi|25384694|pir||AI1305
metal cations ABC transporter, ATP-binding proteins
homolog lmo1849 [imported] - Listeria monocytogenes
(strain EGD-e) gi|16411303|emb|CAC99927.1| similar to
metal cations ABC transporter, ATP-binding proteins
[Listeria monocytogenes]
Length = 240
Score = 29.6 bits (65), Expect = 9.6
Identities = 17/46 (36%), Positives = 24/46 (51%)
Frame = +3
Query: 75 LQKLRDNSLTPAYIEEDAHQMHAYKSAI*LQSDYQTCNQKIILHMP 212
L+KLRDN T + D H++ AY I L N+K++ H P
Sbjct: 176 LKKLRDNGKTIVVVHHDFHKVAAYFDDIIL------LNKKLVAHGP 215
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 283,110,163
Number of Sequences: 1393205
Number of extensions: 4897730
Number of successful extensions: 8432
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8430
length of database: 448,689,247
effective HSP length: 105
effective length of database: 302,402,722
effective search space used: 7257665328
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
