Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003927A_C01 KMC003927A_c01
(483 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK12935.1|AF323103_1 phosphatase-like protein Mtc923 [Medica... 84 6e-16
ref|NP_567262.1| putative membrane trafficking factor; protein i... 83 2e-15
pir||T01818 hypothetical protein T27D20.10 - Arabidopsis thalian... 83 2e-15
gb|AAK92701.1| putative phosphatase [Arabidopsis thaliana] 79 3e-14
ref|NP_567463.1| phosphatase like protein; protein id: At4g15410... 79 3e-14
>gb|AAK12935.1|AF323103_1 phosphatase-like protein Mtc923 [Medicago truncatula]
Length = 405
Score = 84.3 bits (207), Expect = 6e-16
Identities = 41/51 (80%), Positives = 46/51 (89%)
Frame = -3
Query: 481 ISDIRAFIDASRPGGQQNYQLQMMGFPPKVLTDENQTIEQAGLANSVVMQK 329
I DIRAFIDASRPGG ++YQLQ MGFPPK LTD +QTIEQAG+ANSVV+QK
Sbjct: 354 IRDIRAFIDASRPGGTRSYQLQTMGFPPKQLTDLDQTIEQAGIANSVVIQK 404
>ref|NP_567262.1| putative membrane trafficking factor; protein id: At4g04210.1,
supported by cDNA: 1463., supported by cDNA: gi_20268691
[Arabidopsis thaliana] gi|20268692|gb|AAM14050.1|
putative membrane trafficking factor [Arabidopsis
thaliana] gi|21553471|gb|AAM62564.1| putative membrane
trafficking factor [Arabidopsis thaliana]
gi|21689865|gb|AAM67493.1| putative membrane trafficking
factor [Arabidopsis thaliana]
Length = 303
Score = 82.8 bits (203), Expect = 2e-15
Identities = 39/52 (75%), Positives = 44/52 (84%)
Frame = -3
Query: 481 ISDIRAFIDASRPGGQQNYQLQMMGFPPKVLTDENQTIEQAGLANSVVMQKF 326
++DIR FID+SRPG NYQLQ MGFPPK LTD QTIE+AGLANSVV+QKF
Sbjct: 252 VNDIRGFIDSSRPGASLNYQLQTMGFPPKPLTDLTQTIEEAGLANSVVLQKF 303
>pir||T01818 hypothetical protein T27D20.10 - Arabidopsis thaliana
gi|3377843|gb|AAC28225.1| contains similarity to rat p47
protein (GB:AB002086) [Arabidopsis thaliana]
gi|7267177|emb|CAB77889.1| putative membrane trafficking
factor [Arabidopsis thaliana]
Length = 308
Score = 82.8 bits (203), Expect = 2e-15
Identities = 39/52 (75%), Positives = 44/52 (84%)
Frame = -3
Query: 481 ISDIRAFIDASRPGGQQNYQLQMMGFPPKVLTDENQTIEQAGLANSVVMQKF 326
++DIR FID+SRPG NYQLQ MGFPPK LTD QTIE+AGLANSVV+QKF
Sbjct: 257 VNDIRGFIDSSRPGASLNYQLQTMGFPPKPLTDLTQTIEEAGLANSVVLQKF 308
>gb|AAK92701.1| putative phosphatase [Arabidopsis thaliana]
Length = 421
Score = 79.0 bits (193), Expect = 3e-14
Identities = 36/52 (69%), Positives = 44/52 (84%)
Frame = -3
Query: 481 ISDIRAFIDASRPGGQQNYQLQMMGFPPKVLTDENQTIEQAGLANSVVMQKF 326
+ D+R FIDASRPGG + YQL MGFPPK LT+ +QTIEQAG+AN+VV+QKF
Sbjct: 370 VRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQKF 421
>ref|NP_567463.1| phosphatase like protein; protein id: At4g15410.1, supported by
cDNA: gi_15292664 [Arabidopsis thaliana]
Length = 421
Score = 79.0 bits (193), Expect = 3e-14
Identities = 36/52 (69%), Positives = 44/52 (84%)
Frame = -3
Query: 481 ISDIRAFIDASRPGGQQNYQLQMMGFPPKVLTDENQTIEQAGLANSVVMQKF 326
+ D+R FIDASRPGG + YQL MGFPPK LT+ +QTIEQAG+AN+VV+QKF
Sbjct: 370 VRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQKF 421
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,401,155
Number of Sequences: 1393205
Number of extensions: 7598214
Number of successful extensions: 18446
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 17485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18441
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
