Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003926A_C01 KMC003926A_c01
(713 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196914.1| ABC transporter family protein; protein id: At5... 158 6e-38
dbj|BAB08289.1| contains similarity to ABC transporter, ATP-bind... 158 6e-38
ref|NP_681061.1| ABC transporter ATP-binding protein [Thermosyne... 98 1e-19
gb|ZP_00108376.1| hypothetical protein [Nostoc punctiforme] 97 2e-19
ref|NP_485587.1| ATP-binding protein of ABC transporter [Nostoc ... 94 1e-18
>ref|NP_196914.1| ABC transporter family protein; protein id: At5g14100.1, supported
by cDNA: 151943. [Arabidopsis thaliana]
gi|21553579|gb|AAM62672.1| contains similarity to ABC
transporter, ATP-binding protein [Arabidopsis thaliana]
gi|26452494|dbj|BAC43332.1| unknown protein [Arabidopsis
thaliana]
Length = 278
Score = 158 bits (400), Expect = 6e-38
Identities = 82/99 (82%), Positives = 86/99 (86%)
Frame = -1
Query: 599 VGLSGISLDKNPQSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 420
VGL I LDK+PQ LSGGYKRRLALAIQLVQ PDLLILDEPLAGLDWKARADV KLLKHL
Sbjct: 180 VGLDSIPLDKDPQLLSGGYKRRLALAIQLVQTPDLLILDEPLAGLDWKARADVAKLLKHL 239
Query: 419 KKELTVLVVSHDLREFASLVDRSWRMEMGGNLREEFLPL 303
KKELT+LVVSHDLRE A+LVD+SWRME GG L E PL
Sbjct: 240 KKELTLLVVSHDLRELAALVDQSWRMETGGVLVAERPPL 278
>dbj|BAB08289.1| contains similarity to ABC transporter, ATP-binding
protein~gene_id:MUA22.10 [Arabidopsis thaliana]
Length = 270
Score = 158 bits (400), Expect = 6e-38
Identities = 82/99 (82%), Positives = 86/99 (86%)
Frame = -1
Query: 599 VGLSGISLDKNPQSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 420
VGL I LDK+PQ LSGGYKRRLALAIQLVQ PDLLILDEPLAGLDWKARADV KLLKHL
Sbjct: 172 VGLDSIPLDKDPQLLSGGYKRRLALAIQLVQTPDLLILDEPLAGLDWKARADVAKLLKHL 231
Query: 419 KKELTVLVVSHDLREFASLVDRSWRMEMGGNLREEFLPL 303
KKELT+LVVSHDLRE A+LVD+SWRME GG L E PL
Sbjct: 232 KKELTLLVVSHDLRELAALVDQSWRMETGGVLVAERPPL 270
>ref|NP_681061.1| ABC transporter ATP-binding protein [Thermosynechococcus elongatus
BP-1] gi|22293991|dbj|BAC07823.1| ABC transporter
ATP-binding protein [Thermosynechococcus elongatus BP-1]
Length = 194
Score = 98.2 bits (243), Expect = 1e-19
Identities = 48/89 (53%), Positives = 63/89 (69%)
Frame = -1
Query: 599 VGLSGISLDKNPQSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 420
VGL + L P+SLSGG +RRLALA+QLV+ P LL+LDEP AGLDW R +V++L L
Sbjct: 88 VGLDHLPLHTRPESLSGGQQRRLALAVQLVRQPYLLLLDEPTAGLDWSMRRQLVQVLGRL 147
Query: 419 KKELTVLVVSHDLREFASLVDRSWRMEMG 333
KK ++LVV+H+ E + DR WR+E G
Sbjct: 148 KKHWSLLVVTHEATELQEISDRRWRLENG 176
>gb|ZP_00108376.1| hypothetical protein [Nostoc punctiforme]
Length = 224
Score = 97.4 bits (241), Expect = 2e-19
Identities = 46/89 (51%), Positives = 63/89 (70%)
Frame = -1
Query: 599 VGLSGISLDKNPQSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 420
VGL +SL P +LSGG +RRLALA+QL++ P+LL+LDEP AGLDW R +V LL L
Sbjct: 115 VGLEHLSLSAAPHALSGGQQRRLALAVQLIRQPNLLLLDEPTAGLDWSMRRQLVNLLAKL 174
Query: 419 KKELTVLVVSHDLREFASLVDRSWRMEMG 333
K++ T+LVV+HD + ++ DR W + G
Sbjct: 175 KQDWTLLVVTHDAGDLLAIADRCWTLNHG 203
>ref|NP_485587.1| ATP-binding protein of ABC transporter [Nostoc sp. PCC 7120]
gi|25297379|pir||AE1999 ATP-binding protein of ABC
transporter all1547 [imported] - Nostoc sp. (strain PCC
7120) gi|17135367|dbj|BAB77913.1| ATP-binding protein of
ABC transporter [Nostoc sp. PCC 7120]
Length = 224
Score = 94.4 bits (233), Expect = 1e-18
Identities = 45/89 (50%), Positives = 62/89 (69%)
Frame = -1
Query: 599 VGLSGISLDKNPQSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 420
VGL +SL P +LSGG +RRLALA+QL++ P+LL+LDEP AGLDW R +V LL L
Sbjct: 115 VGLEHLSLSAAPYALSGGQQRRLALAVQLIRQPNLLLLDEPTAGLDWSMRRQLVNLLAKL 174
Query: 419 KKELTVLVVSHDLREFASLVDRSWRMEMG 333
K++ T+LVV+HD + ++ D W + G
Sbjct: 175 KQDWTLLVVTHDAGDLLAIADYCWTLNHG 203
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,557,874
Number of Sequences: 1393205
Number of extensions: 11337272
Number of successful extensions: 40170
Number of sequences better than 10.0: 10352
Number of HSP's better than 10.0 without gapping: 36408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39386
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
