Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003924A_C01 KMC003924A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564045.1| protein phosphatase 2C (PP2C), putative; protei... 142 4e-33
gb|AAL16282.1|AF428352_1 At1g18030/T10F20_3 [Arabidopsis thaliana] 142 4e-33
pir||G86315 hypothetical protein T10F20.4 - Arabidopsis thaliana... 142 4e-33
ref|NP_180133.1| protein phosphatase 2C (PP2C); protein id: At2g... 66 4e-10
dbj|BAB88943.1| protein phosphatase 2C [Mesembryanthemum crystal... 62 8e-09
>ref|NP_564045.1| protein phosphatase 2C (PP2C), putative; protein id: At1g18030.1,
supported by cDNA: gi_16226855 [Arabidopsis thaliana]
Length = 351
Score = 142 bits (358), Expect = 4e-33
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = -3
Query: 626 GDRQFQKVGVIATPDIQSLDLTDREHFIILGCDGLWGVFGPSDAVDFVQKLLNEGLPVTT 447
GDR F+K GV ATPDI + +LT+RE+F+ILGCDGLW VFGPSDAV FVQKLL EGL V+T
Sbjct: 263 GDRHFKKFGVSATPDIHAFELTERENFMILGCDGLWEVFGPSDAVGFVQKLLKEGLHVST 322
Query: 446 VSRRLVREAIRERQCQDNCTAIVIVFKR 363
VSRRLV+EA++ER+C+DNCTAIVIVFKR
Sbjct: 323 VSRRLVKEAVKERRCKDNCTAIVIVFKR 350
>gb|AAL16282.1|AF428352_1 At1g18030/T10F20_3 [Arabidopsis thaliana]
Length = 351
Score = 142 bits (358), Expect = 4e-33
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = -3
Query: 626 GDRQFQKVGVIATPDIQSLDLTDREHFIILGCDGLWGVFGPSDAVDFVQKLLNEGLPVTT 447
GDR F+K GV ATPDI + +LT+RE+F+ILGCDGLW VFGPSDAV FVQKLL EGL V+T
Sbjct: 263 GDRHFKKFGVSATPDIHAFELTERENFMILGCDGLWEVFGPSDAVGFVQKLLKEGLHVST 322
Query: 446 VSRRLVREAIRERQCQDNCTAIVIVFKR 363
VSRRLV+EA++ER+C+DNCTAIVIVFKR
Sbjct: 323 VSRRLVKEAVKERRCKDNCTAIVIVFKR 350
>pir||G86315 hypothetical protein T10F20.4 - Arabidopsis thaliana
gi|9719738|gb|AAF97840.1|AC034107_23 Contains similarity
to protein phosphatase 2C from Rattus norvegicus
gb|AF095927 and contains a protein phosphatase 2C
PF|00481 domain. ESTs gb|N95912, gb|AI993625 come from
this gene. [Arabidopsis thaliana]
Length = 341
Score = 142 bits (358), Expect = 4e-33
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = -3
Query: 626 GDRQFQKVGVIATPDIQSLDLTDREHFIILGCDGLWGVFGPSDAVDFVQKLLNEGLPVTT 447
GDR F+K GV ATPDI + +LT+RE+F+ILGCDGLW VFGPSDAV FVQKLL EGL V+T
Sbjct: 253 GDRHFKKFGVSATPDIHAFELTERENFMILGCDGLWEVFGPSDAVGFVQKLLKEGLHVST 312
Query: 446 VSRRLVREAIRERQCQDNCTAIVIVFKR 363
VSRRLV+EA++ER+C+DNCTAIVIVFKR
Sbjct: 313 VSRRLVKEAVKERRCKDNCTAIVIVFKR 340
>ref|NP_180133.1| protein phosphatase 2C (PP2C); protein id: At2g25620.1, supported
by cDNA: gi_12642917, supported by cDNA: gi_14517519,
supported by cDNA: gi_16323271 [Arabidopsis thaliana]
gi|25352218|pir||F84650 probable protein phosphatase 2C
[imported] - Arabidopsis thaliana
gi|4874313|gb|AAD31375.1| putative protein phosphatase
2C [Arabidopsis thaliana]
gi|11908108|gb|AAG41483.1|AF326901_1 putative protein
phosphatase 2C [Arabidopsis thaliana]
gi|12642918|gb|AAK00401.1|AF339719_1 putative protein
phosphatase 2C [Arabidopsis thaliana]
gi|14517520|gb|AAK62650.1| At2g25620/F3N11.7
[Arabidopsis thaliana] gi|16323272|gb|AAL15370.1|
At2g25620/F3N11.7 [Arabidopsis thaliana]
gi|16930687|gb|AAL32009.1|AF436827_1 At2g25620/F3N11.7
[Arabidopsis thaliana] gi|27311763|gb|AAO00847.1|
Unnknown protein [Arabidopsis thaliana]
Length = 392
Score = 65.9 bits (159), Expect = 4e-10
Identities = 31/75 (41%), Positives = 49/75 (65%)
Frame = -3
Query: 599 VIATPDIQSLDLTDREHFIILGCDGLWGVFGPSDAVDFVQKLLNEGLPVTTVSRRLVREA 420
+IA P++ + LT+ + F+I+GCDG+W VF +AVDF ++ L E S+ LV EA
Sbjct: 281 LIAEPELMTTKLTEEDEFLIIGCDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKELVEEA 340
Query: 419 IRERQCQDNCTAIVI 375
++ R+ DN TA+V+
Sbjct: 341 LK-RKSADNVTAVVV 354
>dbj|BAB88943.1| protein phosphatase 2C [Mesembryanthemum crystallinum]
Length = 380
Score = 61.6 bits (148), Expect = 8e-09
Identities = 30/76 (39%), Positives = 47/76 (61%)
Frame = -3
Query: 593 ATPDIQSLDLTDREHFIILGCDGLWGVFGPSDAVDFVQKLLNEGLPVTTVSRRLVREAIR 414
A P++ + +LT + F+I+GCDGLW VF +AVDF ++ L + SR LV EA++
Sbjct: 271 AEPELITTELTQEDEFLIIGCDGLWDVFRSQNAVDFARRRLQDHNDPVMCSRDLVDEALK 330
Query: 413 ERQCQDNCTAIVIVFK 366
R+ DN +V+ F+
Sbjct: 331 -RKSGDNLAVVVVCFQ 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 558,823,115
Number of Sequences: 1393205
Number of extensions: 12096044
Number of successful extensions: 30218
Number of sequences better than 10.0: 304
Number of HSP's better than 10.0 without gapping: 29181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30202
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
