Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003922A_C01 KMC003922A_c01
(626 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA92723.1| ESTs AU082452(S2330),AU058131(S5384),D40386(S233... 63 3e-09
gb|AAC47556.1| insect intestinal mucin IIM14 [Trichoplusia ni] 42 0.009
gb|AAC47557.1| insect intestinal mucin IIM22 [Trichoplusia ni] 41 0.015
ref|NP_572631.1| CG17255-PA [Drosophila melanogaster] gi|2464102... 36 0.021
gb|AAM76206.1| SD10723p [Drosophila melanogaster] 36 0.021
>dbj|BAA92723.1| ESTs AU082452(S2330),AU058131(S5384),D40386(S2330), D23841(R0349)
correspond to a region of the predicted
gene.~hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 585
Score = 63.2 bits (152), Expect = 3e-09
Identities = 29/66 (43%), Positives = 43/66 (64%), Gaps = 2/66 (3%)
Frame = -1
Query: 626 YAWMRSAGLLVGFTVGSVSPGNIRTSFGAAFCTAIAGIVVLLFGNISDVGGAVAAGHVR- 450
YA++R G ++GF S PG SF AAF + GI+VL+FGN+S++G AAGH++
Sbjct: 498 YAFVRCIGAMIGFAAASAGPGRAGGSFAAAFLGSFLGIIVLIFGNVSNIGALKAAGHLKG 557
Query: 449 -DDSER 435
+D +R
Sbjct: 558 MEDEKR 563
>gb|AAC47556.1| insect intestinal mucin IIM14 [Trichoplusia ni]
Length = 788
Score = 41.6 bits (96), Expect = 0.009
Identities = 24/73 (32%), Positives = 32/73 (42%)
Frame = +1
Query: 391 TCTDSFVSNPATAELLSLSSLTCPAATAPPTSLIFPKSNTTIPAMAVQNAAPNEVLMLPG 570
T T + P TA +++T P AP T+ P + T+P A AAP V P
Sbjct: 610 TVTSPPTAAPTTAAPAPNTTVTVPPTAAPTTAAPAPNTTVTVPPTAAPTAAPPTVAHAPN 669
Query: 571 DTEPTVNPTNKPA 609
T V T+ PA
Sbjct: 670 TTAAPVTTTSAPA 682
Score = 34.3 bits (77), Expect = 1.4
Identities = 23/72 (31%), Positives = 31/72 (42%), Gaps = 3/72 (4%)
Frame = +1
Query: 418 PATAELLSLSSLTCPAATAPPTSLIFPKSNTTIPAMAVQNA---APNEVLMLPGDTEPTV 588
P TA +++T P AP T+ P + T+P A APN + +P PT
Sbjct: 600 PTTAVPEIPTTVTSPPTAAPTTAAPAPNTTVTVPPTAAPTTAAPAPNTTVTVP----PTA 655
Query: 589 NPTNKPALRIHA 624
PT P HA
Sbjct: 656 APTAAPPTVAHA 667
>gb|AAC47557.1| insect intestinal mucin IIM22 [Trichoplusia ni]
Length = 807
Score = 40.8 bits (94), Expect = 0.015
Identities = 22/64 (34%), Positives = 29/64 (44%)
Frame = +1
Query: 418 PATAELLSLSSLTCPAATAPPTSLIFPKSNTTIPAMAVQNAAPNEVLMLPGDTEPTVNPT 597
P TA +++T P AP T+ P + T+P A AAP V P T V T
Sbjct: 638 PTTAAPAPNTTVTAPPTAAPTTAAPAPNTTVTVPPTAAPTAAPPTVAPAPNTTAAPVTTT 697
Query: 598 NKPA 609
+ PA
Sbjct: 698 SAPA 701
>ref|NP_572631.1| CG17255-PA [Drosophila melanogaster] gi|24641027|ref|NP_727425.1|
CG17255-PB [Drosophila melanogaster]
gi|22832027|gb|AAF46591.2| CG17255-PA [Drosophila
melanogaster] gi|22832028|gb|AAN09261.1| CG17255-PB
[Drosophila melanogaster]
Length = 2310
Score = 35.8 bits (81), Expect(2) = 0.021
Identities = 32/97 (32%), Positives = 39/97 (39%), Gaps = 22/97 (22%)
Frame = +2
Query: 329 YHALSSP*PFI----HWFINGVQF------KHAQIPSYPIQQQQSFSHYHP*HALQQQHL 478
+HALSSP P H + +G F + Q YP QQQ +H QQQHL
Sbjct: 1636 HHALSSPGPVPGSHGHGYSHGSPFDAGSLEQQFQQEDYPSPQQQQQAHQKTKQLQQQQHL 1695
Query: 479 ------------QHH*YFQKATQQSQQWQCKTQLQMK 553
QH Q+A Q QQ Q Q Q +
Sbjct: 1696 GMSPPPSQQQQQQHSQQQQQAQHQQQQQQAHQQQQQQ 1732
Score = 23.5 bits (49), Expect(2) = 0.021
Identities = 11/38 (28%), Positives = 15/38 (38%)
Frame = +3
Query: 237 HEIKPFFTLCMHHH*HHHHLQRII*AQTAKCTMHYHHH 350
H+ P + + H HHH Q+ Q A HH
Sbjct: 1588 HQQMPHYAVSAVHMQSHHHQQQQQQQQAAVAAAQAQHH 1625
>gb|AAM76206.1| SD10723p [Drosophila melanogaster]
Length = 981
Score = 35.8 bits (81), Expect(2) = 0.021
Identities = 32/97 (32%), Positives = 39/97 (39%), Gaps = 22/97 (22%)
Frame = +2
Query: 329 YHALSSP*PFI----HWFINGVQF------KHAQIPSYPIQQQQSFSHYHP*HALQQQHL 478
+HALSSP P H + +G F + Q YP QQQ +H QQQHL
Sbjct: 308 HHALSSPGPVPGSHGHGYSHGSPFDAGSLEQQFQQEDYPSPQQQQQAHQKTKQLQQQQHL 367
Query: 479 ------------QHH*YFQKATQQSQQWQCKTQLQMK 553
QH Q+A Q QQ Q Q Q +
Sbjct: 368 GMSPPPSQQQQQQHSQQQQQAQHQQQQQQAHQQQQQQ 404
Score = 23.5 bits (49), Expect(2) = 0.021
Identities = 11/38 (28%), Positives = 15/38 (38%)
Frame = +3
Query: 237 HEIKPFFTLCMHHH*HHHHLQRII*AQTAKCTMHYHHH 350
H+ P + + H HHH Q+ Q A HH
Sbjct: 260 HQQMPHYAVSAVHMQSHHHQQQQQQQQAAVAAAQAQHH 297
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,592,499
Number of Sequences: 1393205
Number of extensions: 12442822
Number of successful extensions: 74774
Number of sequences better than 10.0: 315
Number of HSP's better than 10.0 without gapping: 52179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67189
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
