Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003920A_C05 KMC003920A_c05
(655 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192772.1| light-harvesting chlorophyll a/b binding protei... 253 1e-66
gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis... 252 3e-66
emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Lycopersicon es... 247 9e-65
pir||S16294 chlorophyll a/b-binding protein type I precursor - t... 247 9e-65
pir||T02251 chlorophyll a/b-binding protein CP26 precursor - mai... 246 1e-64
>ref|NP_192772.1| light-harvesting chlorophyll a/b binding protein; protein id:
At4g10340.1, supported by cDNA: 39765., supported by
cDNA: gi_11908105, supported by cDNA: gi_12642915,
supported by cDNA: gi_14190462, supported by cDNA:
gi_15809717, supported by cDNA: gi_15983445, supported
by cDNA: gi_4741957 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89|CB26_ARATH Chlorophyll A/B-binding
protein CP26, chloroplast precursor (Light-harvesting
complex II protein 5) (LHCB5) (LHCIIc)
gi|7443228|pir||T04049 chlorophyll a/b-binding protein
CP26 [imported] - Arabidopsis thaliana
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding
protein-like [Arabidopsis thaliana]
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein
[Arabidopsis thaliana] gi|7267731|emb|CAB78157.1|
chlorophyll a/b-binding protein-like [Arabidopsis
thaliana] gi|11908106|gb|AAG41482.1|AF326900_1 putative
chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative
chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1
AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140
[Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1
AT4g10340/F24G24_140 [Arabidopsis thaliana]
Length = 280
Score = 253 bits (646), Expect(2) = 1e-66
Identities = 122/130 (93%), Positives = 127/130 (96%)
Frame = -2
Query: 654 NCGPEAVWFKTGALLLDGNTLNYFGKPIPINLVVAVVAEVVLLGGAEYYRITNGLDFEDK 475
NCGPEAVWFKTGALLLDGNTLNYFGK IPINLV+AVVAEVVLLGGAEYYRITNGLDFEDK
Sbjct: 140 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDK 199
Query: 474 LHPGGPFDPLGLAKDPDPAALLKVKEIKNGRLAMFSMLGFFIQAYVTGDGPVENLAKHLS 295
LHPGGPFDPLGLAKDP+ ALLKVKEIKNGRLAMF+MLGFFIQAYVTG+GPVENLAKHLS
Sbjct: 200 LHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLS 259
Query: 294 DPFGNHLLTV 265
DPFGN+LLTV
Sbjct: 260 DPFGNNLLTV 269
Score = 22.3 bits (46), Expect(2) = 1e-66
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3
Query: 263 LAGNAERAPTL 231
+AG AERAPTL
Sbjct: 270 IAGTAERAPTL 280
>gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 252 bits (643), Expect(2) = 3e-66
Identities = 121/130 (93%), Positives = 127/130 (97%)
Frame = -2
Query: 654 NCGPEAVWFKTGALLLDGNTLNYFGKPIPINLVVAVVAEVVLLGGAEYYRITNGLDFEDK 475
NCGPEAVWFKTGALLLDGNTLNYFGK IPINLV+AVVAEVVLLGG+EYYRITNGLDFEDK
Sbjct: 140 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGSEYYRITNGLDFEDK 199
Query: 474 LHPGGPFDPLGLAKDPDPAALLKVKEIKNGRLAMFSMLGFFIQAYVTGDGPVENLAKHLS 295
LHPGGPFDPLGLAKDP+ ALLKVKEIKNGRLAMF+MLGFFIQAYVTG+GPVENLAKHLS
Sbjct: 200 LHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLS 259
Query: 294 DPFGNHLLTV 265
DPFGN+LLTV
Sbjct: 260 DPFGNNLLTV 269
Score = 22.3 bits (46), Expect(2) = 3e-66
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3
Query: 263 LAGNAERAPTL 231
+AG AERAPTL
Sbjct: 270 IAGTAERAPTL 280
>emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Lycopersicon esculentum]
Length = 286
Score = 247 bits (631), Expect = 9e-65
Identities = 119/130 (91%), Positives = 124/130 (94%)
Frame = -2
Query: 654 NCGPEAVWFKTGALLLDGNTLNYFGKPIPINLVVAVVAEVVLLGGAEYYRITNGLDFEDK 475
NCGPEAVWFKTGALLLDGNTLNYFGK IPINL++AVVAEVVL+GGAEYYRI NGLD EDK
Sbjct: 146 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLILAVVAEVVLVGGAEYYRIINGLDLEDK 205
Query: 474 LHPGGPFDPLGLAKDPDPAALLKVKEIKNGRLAMFSMLGFFIQAYVTGDGPVENLAKHLS 295
LHPGGPFDPLGLAKDPD AA+LKVKEIKNGRLAMFSMLGFFIQAYVTG GPVENLA HLS
Sbjct: 206 LHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSMLGFFIQAYVTGQGPVENLAAHLS 265
Query: 294 DPFGNHLLTV 265
DPFGN+LLTV
Sbjct: 266 DPFGNNLLTV 275
>pir||S16294 chlorophyll a/b-binding protein type I precursor - tomato
Length = 286
Score = 247 bits (631), Expect = 9e-65
Identities = 119/130 (91%), Positives = 124/130 (94%)
Frame = -2
Query: 654 NCGPEAVWFKTGALLLDGNTLNYFGKPIPINLVVAVVAEVVLLGGAEYYRITNGLDFEDK 475
NCGPEAVWFKTGALLLDGNTLNYFGK IPINL++AVVAEVVL+GGAEYYRI NGLD EDK
Sbjct: 146 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLILAVVAEVVLVGGAEYYRIINGLDLEDK 205
Query: 474 LHPGGPFDPLGLAKDPDPAALLKVKEIKNGRLAMFSMLGFFIQAYVTGDGPVENLAKHLS 295
LHPGGPFDPLGLAKDPD AA+LKVKEIKNGRLAMFSMLGFFIQAYVTG GPVENLA HLS
Sbjct: 206 LHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSMLGFFIQAYVTGQGPVENLAAHLS 265
Query: 294 DPFGNHLLTV 265
DPFGN+LLTV
Sbjct: 266 DPFGNNLLTV 275
>pir||T02251 chlorophyll a/b-binding protein CP26 precursor - maize
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding
apoprotein CP26 precursor
Length = 283
Score = 246 bits (629), Expect = 1e-64
Identities = 118/130 (90%), Positives = 123/130 (93%)
Frame = -2
Query: 654 NCGPEAVWFKTGALLLDGNTLNYFGKPIPINLVVAVVAEVVLLGGAEYYRITNGLDFEDK 475
NCGPEAVWFKTGALLLDGNTLNYFG IPINLVVAV+AEVVL+GGAEYYRITNGLD EDK
Sbjct: 143 NCGPEAVWFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVVLVGGAEYYRITNGLDLEDK 202
Query: 474 LHPGGPFDPLGLAKDPDPAALLKVKEIKNGRLAMFSMLGFFIQAYVTGDGPVENLAKHLS 295
LHPGGPFDPLGLA DPD AA+LKVKEIKNGRLAMFSM FFIQAYVTG+GPVENLAKHLS
Sbjct: 203 LHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLS 262
Query: 294 DPFGNHLLTV 265
DPFGN+LLTV
Sbjct: 263 DPFGNNLLTV 272
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 573,920,798
Number of Sequences: 1393205
Number of extensions: 12979194
Number of successful extensions: 43249
Number of sequences better than 10.0: 404
Number of HSP's better than 10.0 without gapping: 38691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42709
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
