Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003919A_C01 KMC003919A_c01
(459 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD02288.1| plastoglobule associated protein PG1 precursor [P... 101 4e-21
gb|AAK57563.1| plastid-lipid associated protein PAP3 [Brassica r... 94 5e-19
gb|AAK57566.1|AF290568_1 plastid-lipid associated protein PAP3 [... 94 5e-19
ref|NP_181092.1| putative fibrillin; protein id: At2g35490.1, su... 94 9e-19
gb|AAK68845.1| putative fibrillin [Arabidopsis thaliana] gi|2014... 94 9e-19
>gb|AAD02288.1| plastoglobule associated protein PG1 precursor [Pisum sativum]
Length = 358
Score = 101 bits (251), Expect = 4e-21
Identities = 49/54 (90%), Positives = 52/54 (95%)
Frame = -3
Query: 457 ISRVISGQPPLKIPLPGERTSSWLITTYLDEDLRISKGDGGLFVLAREGSPLLD 296
ISRVISGQ PLKIP+PGERTSSWLITTYLD+DLRIS+GDGGLFVLAREGS LLD
Sbjct: 304 ISRVISGQSPLKIPIPGERTSSWLITTYLDKDLRISRGDGGLFVLAREGSSLLD 357
>gb|AAK57563.1| plastid-lipid associated protein PAP3 [Brassica rapa]
Length = 360
Score = 94.4 bits (233), Expect = 5e-19
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = -3
Query: 457 ISRVISGQPPLKIPLPGERTSSWLITTYLDEDLRISKGDGGLFVLAREGSPLLD 296
ISR ISGQPPLK+P PG R SSWL+TTYLD+DLRIS+GDGGLFVLAREGS LL+
Sbjct: 306 ISRAISGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDGGLFVLAREGSSLLE 359
>gb|AAK57566.1|AF290568_1 plastid-lipid associated protein PAP3 [Brassica rapa]
Length = 360
Score = 94.4 bits (233), Expect = 5e-19
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = -3
Query: 457 ISRVISGQPPLKIPLPGERTSSWLITTYLDEDLRISKGDGGLFVLAREGSPLLD 296
ISR ISGQPPLK+P PG R SSWL+TTYLD+DLRIS+GDGGLFVLAREGS LL+
Sbjct: 306 ISRAISGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDGGLFVLAREGSSLLE 359
>ref|NP_181092.1| putative fibrillin; protein id: At2g35490.1, supported by cDNA:
38584., supported by cDNA: gi_14596234, supported by
cDNA: gi_20148240 [Arabidopsis thaliana]
gi|25408381|pir||C84769 probable fibrillin [imported] -
Arabidopsis thaliana gi|3608139|gb|AAC36172.1| putative
fibrillin [Arabidopsis thaliana]
gi|21593402|gb|AAM65369.1| putative fibrillin
[Arabidopsis thaliana]
Length = 376
Score = 93.6 bits (231), Expect = 9e-19
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = -3
Query: 457 ISRVISGQPPLKIPLPGERTSSWLITTYLDEDLRISKGDGGLFVLAREGSPLLD 296
ISR +SGQPPLK+P PG R SSWL+TTYLD+DLRIS+GDGGLFVLAREGS LL+
Sbjct: 322 ISRALSGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDGGLFVLAREGSSLLE 375
>gb|AAK68845.1| putative fibrillin [Arabidopsis thaliana]
gi|20148241|gb|AAM10011.1| putative fibrillin
[Arabidopsis thaliana]
Length = 376
Score = 93.6 bits (231), Expect = 9e-19
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = -3
Query: 457 ISRVISGQPPLKIPLPGERTSSWLITTYLDEDLRISKGDGGLFVLAREGSPLLD 296
ISR +SGQPPLK+P PG R SSWL+TTYLD+DLRIS+GDGGLFVLAREGS LL+
Sbjct: 322 ISRALSGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDGGLFVLAREGSSLLE 375
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,526,865
Number of Sequences: 1393205
Number of extensions: 9529276
Number of successful extensions: 27585
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 26871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27565
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
