Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003911A_C01 KMC003911A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565294.1| expressed protein; protein id: At2g03120.1, sup... 192 4e-48
gb|AAM65222.1| unknown [Arabidopsis thaliana] 190 1e-47
gb|AAH34217.1| Similar to histocompatibility (minor) 13 [Mus mus... 99 5e-20
gb|AAH45195.1| Similar to histocompatibility 13 [Mus musculus] 99 5e-20
gb|AAN77098.1|AF515662_1 putative presenilin-like aspartyl prote... 99 5e-20
>ref|NP_565294.1| expressed protein; protein id: At2g03120.1, supported by cDNA:
37655., supported by cDNA: gi_17473841 [Arabidopsis
thaliana] gi|7487148|pir||T02714 hypothetical protein
At2g03120 [imported] - Arabidopsis thaliana
gi|3548818|gb|AAC34490.1| expressed protein [Arabidopsis
thaliana] gi|17473842|gb|AAL38345.1| unknown protein
[Arabidopsis thaliana] gi|21386973|gb|AAM47890.1|
unknown protein [Arabidopsis thaliana]
Length = 344
Score = 192 bits (487), Expect = 4e-48
Identities = 91/111 (81%), Positives = 103/111 (91%)
Frame = -1
Query: 594 LLFPTADAVRPFSMLGLGDIVIPGIFVALALRFDVSRGKQPQYFKSAFLGYAVGVILTIV 415
LLFPT DA+RP+SMLGLGDIVIPGIFVALALRFDVSR +QPQYF SAF+GYAVGVILTIV
Sbjct: 221 LLFPTGDALRPYSMLGLGDIVIPGIFVALALRFDVSRRRQPQYFTSAFIGYAVGVILTIV 280
Query: 414 VMNWFQAAQPALLYIVPSVIGFLAAHCVWNGEVKQLLEFDESKTANSSQEE 262
VMNWFQAAQPALLYIVP+VIGFLA+HC+WNG++K LL FDESKT ++ +E
Sbjct: 281 VMNWFQAAQPALLYIVPAVIGFLASHCIWNGDIKPLLAFDESKTEEATTDE 331
>gb|AAM65222.1| unknown [Arabidopsis thaliana]
Length = 344
Score = 190 bits (483), Expect = 1e-47
Identities = 90/111 (81%), Positives = 103/111 (92%)
Frame = -1
Query: 594 LLFPTADAVRPFSMLGLGDIVIPGIFVALALRFDVSRGKQPQYFKSAFLGYAVGVILTIV 415
LLFPT DA+RP+SMLGLGDIVIPGIFVALALRFDVSR +QPQYF SAF+GYAVGVILTIV
Sbjct: 221 LLFPTGDALRPYSMLGLGDIVIPGIFVALALRFDVSRRRQPQYFTSAFIGYAVGVILTIV 280
Query: 414 VMNWFQAAQPALLYIVPSVIGFLAAHCVWNGEVKQLLEFDESKTANSSQEE 262
VMNWFQAAQPALL+IVP+VIGFLA+HC+WNG++K LL FDESKT ++ +E
Sbjct: 281 VMNWFQAAQPALLFIVPAVIGFLASHCIWNGDIKPLLAFDESKTEEATTDE 331
>gb|AAH34217.1| Similar to histocompatibility (minor) 13 [Mus musculus]
Length = 176
Score = 98.6 bits (244), Expect = 5e-20
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 7/117 (5%)
Frame = -1
Query: 561 FSMLGLGDIVIPGIFVALALRFDVSRGKQPQ-YFKSAFLGYAVGVILTIVVMNWFQAAQP 385
F+MLGLGDIVIPGIF+AL LRFD+S K YF ++F Y G+ LTI +M+ F+ AQP
Sbjct: 56 FAMLGLGDIVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQP 115
Query: 384 ALLYIVPSVIGFLAAHCVWNGEVKQLLEFDESK------TANSSQEEVDAKVTKKDE 232
ALLY+VP+ IGF + GEV ++ ++ES S +E +A +K+ E
Sbjct: 116 ALLYLVPACIGFPVLVALAKGEVAEMFSYEESNPKDPAAVTESKEESTEASASKRLE 172
>gb|AAH45195.1| Similar to histocompatibility 13 [Mus musculus]
Length = 203
Score = 98.6 bits (244), Expect = 5e-20
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 7/117 (5%)
Frame = -1
Query: 561 FSMLGLGDIVIPGIFVALALRFDVSRGKQPQ-YFKSAFLGYAVGVILTIVVMNWFQAAQP 385
F+MLGLGDIVIPGIF+AL LRFD+S K YF ++F Y G+ LTI +M+ F+ AQP
Sbjct: 83 FAMLGLGDIVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQP 142
Query: 384 ALLYIVPSVIGFLAAHCVWNGEVKQLLEFDESK------TANSSQEEVDAKVTKKDE 232
ALLY+VP+ IGF + GEV ++ ++ES S +E +A +K+ E
Sbjct: 143 ALLYLVPACIGFPVLVALAKGEVAEMFSYEESNPKDPAAVTESKEESTEASASKRLE 199
>gb|AAN77098.1|AF515662_1 putative presenilin-like aspartyl protease [Mus musculus]
Length = 378
Score = 98.6 bits (244), Expect = 5e-20
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 7/117 (5%)
Frame = -1
Query: 561 FSMLGLGDIVIPGIFVALALRFDVSRGKQPQ-YFKSAFLGYAVGVILTIVVMNWFQAAQP 385
F+MLGLGDIVIPGIF+AL LRFD+S K YF ++F Y G+ LTI +M+ F+ AQP
Sbjct: 258 FAMLGLGDIVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQP 317
Query: 384 ALLYIVPSVIGFLAAHCVWNGEVKQLLEFDESK------TANSSQEEVDAKVTKKDE 232
ALLY+VP+ IGF + GEV ++ ++ES S +E +A +K+ E
Sbjct: 318 ALLYLVPACIGFPVLVALAKGEVAEMFSYEESNPKDPAAVTESKEESTEASASKRLE 374
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,307,182
Number of Sequences: 1393205
Number of extensions: 10724155
Number of successful extensions: 28812
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 27813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28748
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
