Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003901A_C01 KMC003901A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195688.1| AP2 domain transcription factor RAP2, putative;... 61 7e-09
gb|AAL91280.1| At2g22200/T26C19.14 [Arabidopsis thaliana] gi|235... 49 5e-05
ref|NP_179810.1| AP2 domain transcription factor RAP2, putative;... 49 5e-05
gb|AAF17691.1|AC009243_18 F28K19.29 [Arabidopsis thaliana] 46 3e-04
ref|NP_177931.1| AP2 domain protein RAP2.4; protein id: At1g7808... 46 3e-04
>ref|NP_195688.1| AP2 domain transcription factor RAP2, putative; protein id:
At4g39780.1 [Arabidopsis thaliana]
gi|7487213|pir||T05015 hypothetical protein T19P19.170 -
Arabidopsis thaliana gi|3080447|emb|CAA18764.1| putative
protein [Arabidopsis thaliana]
gi|7270962|emb|CAB80641.1| putative protein [Arabidopsis
thaliana]
Length = 272
Score = 61.2 bits (147), Expect = 7e-09
Identities = 32/48 (66%), Positives = 39/48 (80%), Gaps = 1/48 (2%)
Frame = -1
Query: 514 SDESSPCSSSPESGVT-FFDFSDSNQWDEVENFGLEKYPSLEIDWAAL 374
SDES SSSPESG+T F DFSDS +DE+ +FGLEK+PS+EIDW A+
Sbjct: 220 SDESHVESSSPESGITTFLDFSDSG-FDEIGSFGLEKFPSVEIDWDAI 266
>gb|AAL91280.1| At2g22200/T26C19.14 [Arabidopsis thaliana]
gi|23505831|gb|AAN28775.1| At2g22200/T26C19.14
[Arabidopsis thaliana]
Length = 261
Score = 48.5 bits (114), Expect = 5e-05
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Frame = -1
Query: 523 SPLSDESSPCSSSP----ESGVTFFDFSDSNQWDEVENFGLEKYPSLEIDWAAL 374
SP SDE+S S S TF DFSD+ +++E+ +FGL K+PS+EIDW A+
Sbjct: 203 SPRSDETSLLDESQAEYSSSDKTFLDFSDT-EFEEIGSFGLRKFPSVEIDWDAI 255
>ref|NP_179810.1| AP2 domain transcription factor RAP2, putative; protein id:
At2g22200.1, supported by cDNA: gi_19699340 [Arabidopsis
thaliana] gi|25350214|pir||B84610 AP2 domain
transcription factor [imported] - Arabidopsis thaliana
gi|4567204|gb|AAD23620.1| AP2 domain transcription
factor [Arabidopsis thaliana]
Length = 261
Score = 48.5 bits (114), Expect = 5e-05
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Frame = -1
Query: 523 SPLSDESSPCSSSP----ESGVTFFDFSDSNQWDEVENFGLEKYPSLEIDWAAL 374
SP SDE+S S S TF DFSD+ +++E+ +FGL K+PS+EIDW A+
Sbjct: 203 SPRSDETSLLDESQAEYSSSDKTFLDFSDT-EFEEIGSFGLRKFPSVEIDWDAI 255
>gb|AAF17691.1|AC009243_18 F28K19.29 [Arabidopsis thaliana]
Length = 330
Score = 45.8 bits (107), Expect = 3e-04
Identities = 23/45 (51%), Positives = 28/45 (62%)
Frame = -1
Query: 508 ESSPCSSSPESGVTFFDFSDSNQWDEVENFGLEKYPSLEIDWAAL 374
E S SSP S +TF D + QW+E F LEKYPS EIDW ++
Sbjct: 286 EESTAGSSPLSDLTFADPEEPPQWNET--FSLEKYPSYEIDWDSI 328
>ref|NP_177931.1| AP2 domain protein RAP2.4; protein id: At1g78080.1, supported by
cDNA: gi_13877778 [Arabidopsis thaliana]
gi|23297619|gb|AAN12993.1| putative AP2 domain
containing protein [Arabidopsis thaliana]
Length = 334
Score = 45.8 bits (107), Expect = 3e-04
Identities = 23/45 (51%), Positives = 28/45 (62%)
Frame = -1
Query: 508 ESSPCSSSPESGVTFFDFSDSNQWDEVENFGLEKYPSLEIDWAAL 374
E S SSP S +TF D + QW+E F LEKYPS EIDW ++
Sbjct: 290 EESTAGSSPLSDLTFADPEEPPQWNET--FSLEKYPSYEIDWDSI 332
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,597,452
Number of Sequences: 1393205
Number of extensions: 9878183
Number of successful extensions: 30323
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 28867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30252
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
