Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003894A_C01 KMC003894A_c01
(424 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566326.1| expressed protein; protein id: At3g07950.1, sup... 137 2e-32
gb|AAF21205.1|AC013483_29 unknown protein [Arabidopsis thaliana] 137 2e-32
dbj|BAC20791.1| hypothetical protein~similar to Arabidopsis thal... 118 1e-26
emb|CAD39335.1| OSJNBa0094O15.3 [Oryza sativa (japonica cultivar... 82 2e-15
ref|NP_008955.1| PL6 protein [Homo sapiens] gi|24638130|sp|Q1289... 57 5e-08
>ref|NP_566326.1| expressed protein; protein id: At3g07950.1, supported by cDNA:
13017. [Arabidopsis thaliana] gi|21537325|gb|AAM61666.1|
unknown [Arabidopsis thaliana]
gi|25083369|gb|AAN72066.1| expressed protein
[Arabidopsis thaliana]
Length = 304
Score = 137 bits (346), Expect = 2e-32
Identities = 66/99 (66%), Positives = 77/99 (77%)
Frame = -3
Query: 422 LKGDPHEDFAFSTFFPEFLRPVIDPVASIFHRMLCGRSDASNDSEGYTLGGEPMLGSDPI 243
L+GDP +DFAFSTFFPE LRPVIDP+A IFHRMLCGRS+A+++ Y+ G P+ GSD
Sbjct: 206 LRGDPSDDFAFSTFFPELLRPVIDPIALIFHRMLCGRSNATSEDHDYSTSGAPLPGSDSA 265
Query: 242 EASRRRERGARALEERLAAERLATSHNAGELQTDAAGNV 126
EASRRRERGARALEERL ERL + N ELQ+D NV
Sbjct: 266 EASRRRERGARALEERLGTERLVPARNKDELQSDGLDNV 304
>gb|AAF21205.1|AC013483_29 unknown protein [Arabidopsis thaliana]
Length = 384
Score = 137 bits (346), Expect = 2e-32
Identities = 66/99 (66%), Positives = 77/99 (77%)
Frame = -3
Query: 422 LKGDPHEDFAFSTFFPEFLRPVIDPVASIFHRMLCGRSDASNDSEGYTLGGEPMLGSDPI 243
L+GDP +DFAFSTFFPE LRPVIDP+A IFHRMLCGRS+A+++ Y+ G P+ GSD
Sbjct: 286 LRGDPSDDFAFSTFFPELLRPVIDPIALIFHRMLCGRSNATSEDHDYSTSGAPLPGSDSA 345
Query: 242 EASRRRERGARALEERLAAERLATSHNAGELQTDAAGNV 126
EASRRRERGARALEERL ERL + N ELQ+D NV
Sbjct: 346 EASRRRERGARALEERLGTERLVPARNKDELQSDGLDNV 384
>dbj|BAC20791.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 3,
F17A17.29 [Oryza sativa (japonica cultivar-group)]
Length = 302
Score = 118 bits (296), Expect = 1e-26
Identities = 61/99 (61%), Positives = 77/99 (77%)
Frame = -3
Query: 422 LKGDPHEDFAFSTFFPEFLRPVIDPVASIFHRMLCGRSDASNDSEGYTLGGEPMLGSDPI 243
LKGDP E+F+FS+FFPEFLRPV+DP+ASIFHR+LCGRS+ + D+ G TL P+ GSD I
Sbjct: 206 LKGDPSEEFSFSSFFPEFLRPVLDPIASIFHRLLCGRSERA-DARGQTLDTTPLPGSDSI 264
Query: 242 EASRRRERGARALEERLAAERLATSHNAGELQTDAAGNV 126
EA+RRRERG RALE+RL AE+LA ++ DA+ V
Sbjct: 265 EANRRRERGQRALEQRL-AEKLAAVKSSEGTSQDASDKV 302
>emb|CAD39335.1| OSJNBa0094O15.3 [Oryza sativa (japonica cultivar-group)]
Length = 317
Score = 82.0 bits (201), Expect = 2e-15
Identities = 44/83 (53%), Positives = 55/83 (66%)
Frame = -3
Query: 422 LKGDPHEDFAFSTFFPEFLRPVIDPVASIFHRMLCGRSDASNDSEGYTLGGEPMLGSDPI 243
LKGD +DF+F + FP+ +RPV DPVA++F RMLC RS S + + SDP
Sbjct: 230 LKGDSSDDFSFPSLFPDAMRPVTDPVANLFDRMLCARSRPSELA---------LPVSDPA 280
Query: 242 EASRRRERGARALEERLAAERLA 174
+ASRRRERG R LEERLAA+ A
Sbjct: 281 KASRRRERGERVLEERLAADHAA 303
>ref|NP_008955.1| PL6 protein [Homo sapiens] gi|24638130|sp|Q12893|PL6_HUMAN PL6
protein (Placental protein 6) gi|7513245|pir||G01430 PL6
protein - human gi|1209020|gb|AAA92281.1| PL6 protein
gi|15080383|gb|AAH11948.1|AAH11948 Similar to PL6
protein [Homo sapiens]
gi|16924197|gb|AAH17367.1|AAH17367 PL6 protein [Homo
sapiens]
Length = 351
Score = 57.0 bits (136), Expect = 5e-08
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Frame = -3
Query: 419 KGDPHEDFAFSTFFPEFLRPVIDPVASIFHRMLCGRSDASNDSEGYTLGGEPML-----G 255
+GD + FAF+TFFPE L+PV+ +A++ H +L + Y +G + G
Sbjct: 215 RGDMADHFAFATFFPEILQPVVGLLANLVHSLLVKVKICQKTVKRYDVGAPSSITISLPG 274
Query: 254 SDPIEASRRRERGARALEERL 192
+DP +A RRR+ +AL ERL
Sbjct: 275 TDPQDAERRRQLALKALNERL 295
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 364,018,466
Number of Sequences: 1393205
Number of extensions: 7576221
Number of successful extensions: 21150
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 20558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21124
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
