Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003893A_C01 KMC003893A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176407.1| serpin, putative; protein id: At1g62160.1 [Arab... 59 4e-08
ref|NP_176584.1| hypothetical protein; protein id: At1g64010.1 [... 58 8e-08
pir||B96665 protein F22C12.22 [imported] - Arabidopsis thaliana ... 58 8e-08
pir||S29819 serpin - barley gi|19071|emb|CAA78822.1| protein zx ... 57 1e-07
ref|NP_179060.1| putative serpin; protein id: At2g14540.1, suppo... 56 2e-07
>ref|NP_176407.1| serpin, putative; protein id: At1g62160.1 [Arabidopsis thaliana]
Length = 265
Score = 58.9 bits (141), Expect = 4e-08
Identities = 30/53 (56%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Frame = -1
Query: 540 KGTEATSATVVSGRKRLGGFLGTY-FVADHPFLFLIREDFTGTILFVGQVLNP 385
+GTEA +AT + GF+ T FVADHPFLFLIRE+ TGT+LF GQ+ +P
Sbjct: 211 EGTEAAAATAFVDNEDGCGFVETLDFVADHPFLFLIREEQTGTVLFAGQIFDP 263
>ref|NP_176584.1| hypothetical protein; protein id: At1g64010.1 [Arabidopsis
thaliana]
Length = 185
Score = 57.8 bits (138), Expect = 8e-08
Identities = 29/52 (55%), Positives = 35/52 (66%)
Frame = -1
Query: 540 KGTEATSATVVSGRKRLGGFLGTYFVADHPFLFLIREDFTGTILFVGQVLNP 385
+G EA +AT V G FVADHPFLF+IRED TGT+LFVGQ+ +P
Sbjct: 130 EGAEAIAATAVVGGFGCAFVKRIDFVADHPFLFMIREDKTGTVLFVGQIFDP 181
>pir||B96665 protein F22C12.22 [imported] - Arabidopsis thaliana
gi|6692103|gb|AAF24568.1|AC007764_10 F22C12.22
[Arabidopsis thaliana]
Length = 651
Score = 57.8 bits (138), Expect = 8e-08
Identities = 29/52 (55%), Positives = 35/52 (66%)
Frame = -1
Query: 540 KGTEATSATVVSGRKRLGGFLGTYFVADHPFLFLIREDFTGTILFVGQVLNP 385
+G EA +AT V G FVADHPFLF+IRED TGT+LFVGQ+ +P
Sbjct: 596 EGAEAIAATAVVGGFGCAFVKRIDFVADHPFLFMIREDKTGTVLFVGQIFDP 647
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = -1
Query: 468 FVADHPFLFLIREDFTGTILFV 403
FVADHPFLFLIRE+ TGT+LFV
Sbjct: 344 FVADHPFLFLIREEKTGTVLFV 365
>pir||S29819 serpin - barley gi|19071|emb|CAA78822.1| protein zx [Hordeum
vulgare subsp. vulgare] gi|444778|prf||1908213A protein
Zx
Length = 398
Score = 57.4 bits (137), Expect = 1e-07
Identities = 33/58 (56%), Positives = 38/58 (64%), Gaps = 2/58 (3%)
Frame = -1
Query: 540 KGTEATSAT--VVSGRKRLGGFLGTYFVADHPFLFLIREDFTGTILFVGQVLNPLEGA 373
+GTEA + T VV+ R + FVADHPFLFLIRED TG +LFVG V NPL A
Sbjct: 341 EGTEAAARTARVVTLRSLPVEPVKVDFVADHPFLFLIREDLTGVVLFVGHVFNPLVSA 398
>ref|NP_179060.1| putative serpin; protein id: At2g14540.1, supported by cDNA:
gi_18175862 [Arabidopsis thaliana]
gi|25294068|pir||D84518 probable serpin [imported] -
Arabidopsis thaliana gi|4263819|gb|AAD15462.1| putative
serpin [Arabidopsis thaliana] gi|18175863|gb|AAL59941.1|
putative serpin protein [Arabidopsis thaliana]
gi|21689707|gb|AAM67475.1| putative serpin protein
[Arabidopsis thaliana]
Length = 407
Score = 56.2 bits (134), Expect = 2e-07
Identities = 32/57 (56%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Frame = -1
Query: 540 KGTEATSAT---VVSGRKRLGGFLGTYFVADHPFLFLIREDFTGTILFVGQVLNPLE 379
+GTEA +AT VV+G FVADHPFLFLIRED TGT+LF GQ+ +P E
Sbjct: 343 EGTEAAAATTVVVVTGSCLWEPKKKIDFVADHPFLFLIREDKTGTLLFAGQIFDPSE 399
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,136,443
Number of Sequences: 1393205
Number of extensions: 8643007
Number of successful extensions: 21037
Number of sequences better than 10.0: 422
Number of HSP's better than 10.0 without gapping: 20492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21025
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
