Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003891A_C01 KMC003891A_c01
(446 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704188.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.0
gb|ZP_00069918.1| hypothetical protein [Oenococcus oeni MCW] 32 2.3
ref|NP_739607.1| NADH dehydrogenase subunit 5 [Thrips imaginis] ... 30 5.1
gb|ZP_00070340.1| hypothetical protein [Oenococcus oeni MCW] 30 6.7
sp|P25239|T257_ECOLI Type IIS restriction enzyme Eco57I (Endonuc... 30 8.8
>ref|NP_704188.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498926|emb|CAD51004.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 418
Score = 32.7 bits (73), Expect = 1.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -3
Query: 144 HSLHVSFVDFYRFTSEYIFIDSLIKTFC---RFTSEYIFIDSLIKTFCRF 4
HS SF+ F+ FTS +I S +F FTS +I S +F F
Sbjct: 113 HSFTSSFILFHSFTSSFILFHSFTSSFILFHSFTSSFILFHSFTSSFILF 162
Score = 32.7 bits (73), Expect = 1.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -3
Query: 144 HSLHVSFVDFYRFTSEYIFIDSLIKTFC---RFTSEYIFIDSLIKTFCRF 4
HS SF+ F+ FTS +I S +F FTS +I S +F F
Sbjct: 103 HSFTSSFILFHSFTSSFILFHSFTSSFILFHSFTSSFILFHSFTSSFILF 152
Score = 32.7 bits (73), Expect = 1.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -3
Query: 144 HSLHVSFVDFYRFTSEYIFIDSLIKTFC---RFTSEYIFIDSLIKTFCRF 4
HS SF+ F+ FTS +I S +F FTS +I S +F F
Sbjct: 133 HSFTSSFILFHSFTSSFILFHSFTSSFILFHSFTSSFILFHSFTSSFILF 182
Score = 30.8 bits (68), Expect = 3.9
Identities = 17/48 (35%), Positives = 24/48 (49%), Gaps = 3/48 (6%)
Frame = -3
Query: 138 LHVSFVDFYRFTSEYIFIDSLIKTFC---RFTSEYIFIDSLIKTFCRF 4
L +SF+ F+ FTS +I S +F FTS +I S +F F
Sbjct: 85 LRLSFILFHFFTSSFILFHSFTSSFILFHSFTSSFILFHSFTSSFILF 132
Score = 30.4 bits (67), Expect = 5.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -3
Query: 144 HSLHVSFVDFYRFTSEYIFIDSLIKTFC---RFTSEYIFIDSLIKTFCRF 4
H SF+ F+ FTS +I S +F FTS +I S +F F
Sbjct: 93 HFFTSSFILFHSFTSSFILFHSFTSSFILFHSFTSSFILFHSFTSSFILF 142
Score = 29.6 bits (65), Expect = 8.8
Identities = 18/48 (37%), Positives = 25/48 (51%), Gaps = 3/48 (6%)
Frame = -3
Query: 138 LHVSFVDFYRFTSEYIFIDSLIKTFCRF---TSEYIFIDSLIKTFCRF 4
L +SF+ F+ FTS +I SL +F F T +I SL +F F
Sbjct: 216 LRLSFILFHFFTSSFILFHSLTLSFILFHSLTLSFILFHSLTLSFILF 263
Score = 29.6 bits (65), Expect = 8.8
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 144 HSLHVSFVDFYRFTSEYIFIDSLIKTFCRFTSEYIFIDSLIKTFCRF 4
HS SF+ F+ FTS +I S FTS +I S +F F
Sbjct: 153 HSFTSSFILFHSFTSSFILFHS-------FTSSFILFHSFTSSFILF 192
>gb|ZP_00069918.1| hypothetical protein [Oenococcus oeni MCW]
Length = 455
Score = 31.6 bits (70), Expect = 2.3
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Frame = +2
Query: 65 KVFISESIKIYSLVNL*KSTKDTWRLCVSNVF*ELHVDQLNIDSFLIFP*AVNLRKFIYH 244
K+F S+ + ++L+ L + T W + F D + SF F + +Y
Sbjct: 50 KIFNSKVVLFFALLTLSEITLLIWNY---SKFGSDSQDSGIVGSFARFLSPIVTFILVYF 106
Query: 245 ILSRKA*GFFFNVKNDFKHMKKTNRRLASL--------IPRPTVTLGDSTHLALRNRSDR 400
+L +F++K+DF + N + SL IP+ T+ +G + L N DR
Sbjct: 107 LL-------YFSIKSDFDIKRFINGSMISLSLMAAFVLIPQLTIIVGKNWFLGWANFLDR 159
Query: 401 TLSLFWPDSSS 433
T+ W SS+
Sbjct: 160 TVIPRWDISSN 170
>ref|NP_739607.1| NADH dehydrogenase subunit 5 [Thrips imaginis]
gi|24762258|gb|AAN64178.1| NADH dehydrogenase subunit 5
[Thrips imaginis]
Length = 564
Score = 30.4 bits (67), Expect = 5.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -3
Query: 318 LFVFFMCL---KSFFTLKKKP*AFLDRMW*MNFLR 223
LF FF+C K+FF K K F +MW ++F++
Sbjct: 458 LFSFFICYLLCKNFFVFKSKIIVFFSQMWFLHFVK 492
>gb|ZP_00070340.1| hypothetical protein [Oenococcus oeni MCW]
Length = 432
Score = 30.0 bits (66), Expect = 6.7
Identities = 23/67 (34%), Positives = 29/67 (42%)
Frame = +2
Query: 170 HVDQLNIDSFLIFP*AVNLRKFIYHILSRKA*GFFFNVKNDFKHMKKTNRRLASLIPRPT 349
H ++ F I VNLR F Y L G F + ++ KTN LA LI P
Sbjct: 218 HFSSRHLFDFSILKPIVNLRLFNYFSLQAINIGLSFLIPIFAENFLKTNSLLAGLILLPG 277
Query: 350 VTLGDST 370
LG +T
Sbjct: 278 SLLGAAT 284
>sp|P25239|T257_ECOLI Type IIS restriction enzyme Eco57I (Endonuclease Eco57I) [Includes:
Adenine-specific methyltransferase activity Eco57IA
(M.Eco57IA)] gi|281976|pir||S26426 type IV site-specific
deoxyribonuclease (EC 3.1.21.-) Eco57I - Escherichia
coli gi|41321|emb|CAA43434.1| endonuclease [Escherichia
coli] gi|145139|gb|AAA23389.1| restriction endonuclease
Length = 997
Score = 29.6 bits (65), Expect = 8.8
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 215 LMERSGSCQYLVDQH-VVPRTHSTHTVSTYLLLIFIDSLVSIFL 87
L+ + SC ++ H + H HT+S + LLIF+ ++ IFL
Sbjct: 290 LLSNANSC---IEHHRTIILPHKAHTLSLFSLLIFLGNIYEIFL 330
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 327,444,815
Number of Sequences: 1393205
Number of extensions: 6097373
Number of successful extensions: 11737
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11728
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
