Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003882A_C01 KMC003882A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563809.1| expressed protein; protein id: At1g08250.1, sup... 249 5e-67
ref|NP_180350.1| putative chorismate mutase/prephenate dehydrata... 244 8e-65
gb|AAM65232.1| putative chorismate mutase/prephenate dehydratase... 244 8e-65
ref|NP_197655.1| chorismate mutase/prephenate dehydratase-like p... 234 5e-61
ref|NP_190058.1| putative chloroplast prephenate dehydratase; pr... 231 1e-60
>ref|NP_563809.1| expressed protein; protein id: At1g08250.1, supported by cDNA:
gi_15810502, supported by cDNA: gi_20259554 [Arabidopsis
thaliana] gi|25407032|pir||E86216 protein T23G18.10
[imported] - Arabidopsis thaliana
gi|6579207|gb|AAF18250.1|AC011438_12 T23G18.10
[Arabidopsis thaliana] gi|15810503|gb|AAL07139.1|
unknown protein [Arabidopsis thaliana]
gi|20259555|gb|AAM14120.1| unknown protein [Arabidopsis
thaliana]
Length = 413
Score = 249 bits (637), Expect(2) = 5e-67
Identities = 124/137 (90%), Positives = 133/137 (96%)
Frame = -2
Query: 603 SARAAELYGLQVMADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFK 424
SARAAE+YGL+++ DGIQDD SNVTRFVMLAREPIIPRTDRPFKTSIVFAH+KGTSVLFK
Sbjct: 263 SARAAEIYGLEILEDGIQDDVSNVTRFVMLAREPIIPRTDRPFKTSIVFAHEKGTSVLFK 322
Query: 423 VLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQNAL 244
VLSAFAFR+ISLTKIESRP+ NRPIR+VDDANVGTAKHFEY+FYVDFEASMAE RAQNAL
Sbjct: 323 VLSAFAFRDISLTKIESRPNHNRPIRVVDDANVGTAKHFEYMFYVDFEASMAEARAQNAL 382
Query: 243 AEVQEFTSFLRVLGSYP 193
AEVQEFTSFLRVLGSYP
Sbjct: 383 AEVQEFTSFLRVLGSYP 399
Score = 26.9 bits (58), Expect(2) = 5e-67
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 203 GVTPLDMTPWTPSS 162
G P+DMTPW+P+S
Sbjct: 396 GSYPMDMTPWSPTS 409
>ref|NP_180350.1| putative chorismate mutase/prephenate dehydratase; protein id:
At2g27820.1, supported by cDNA: 37739. [Arabidopsis
thaliana] gi|25407925|pir||D84677 hypothetical protein
At2g27820 [imported] - Arabidopsis thaliana
gi|3860250|gb|AAC73018.1| putative chorismate
mutase/prephenate dehydratase [Arabidopsis thaliana]
Length = 424
Score = 244 bits (623), Expect(2) = 8e-65
Identities = 121/137 (88%), Positives = 131/137 (95%)
Frame = -2
Query: 603 SARAAELYGLQVMADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFK 424
SARAAE+YGL+++ DGIQDD SNVTRFVMLAREPIIPRTDRPFKTSIVFAH+KGT VLFK
Sbjct: 268 SARAAEIYGLEILEDGIQDDASNVTRFVMLAREPIIPRTDRPFKTSIVFAHEKGTCVLFK 327
Query: 423 VLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQNAL 244
VLSAFAFRNISLTKIESRP+ N PIRLVD+ANVGTAKHFEY+FY+DFEASMAE RAQNAL
Sbjct: 328 VLSAFAFRNISLTKIESRPNHNVPIRLVDEANVGTAKHFEYMFYIDFEASMAESRAQNAL 387
Query: 243 AEVQEFTSFLRVLGSYP 193
+EVQEFTSFLRVLGSYP
Sbjct: 388 SEVQEFTSFLRVLGSYP 404
Score = 25.0 bits (53), Expect(2) = 8e-65
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 203 GVTPLDMTPWTPSS 162
G P+DMT W+PSS
Sbjct: 401 GSYPMDMTSWSPSS 414
>gb|AAM65232.1| putative chorismate mutase/prephenate dehydratase [Arabidopsis
thaliana]
Length = 424
Score = 244 bits (623), Expect(2) = 8e-65
Identities = 121/137 (88%), Positives = 131/137 (95%)
Frame = -2
Query: 603 SARAAELYGLQVMADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFK 424
SARAAE+YGL+++ DGIQDD SNVTRFVMLAREPIIPRTDRPFKTSIVFAH+KGT VLFK
Sbjct: 268 SARAAEIYGLEILEDGIQDDASNVTRFVMLAREPIIPRTDRPFKTSIVFAHEKGTCVLFK 327
Query: 423 VLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQNAL 244
VLSAFAFRNISLTKIESRP+ N PIRLVD+ANVGTAKHFEY+FY+DFEASMAE RAQNAL
Sbjct: 328 VLSAFAFRNISLTKIESRPNHNVPIRLVDEANVGTAKHFEYMFYIDFEASMAESRAQNAL 387
Query: 243 AEVQEFTSFLRVLGSYP 193
+EVQEFTSFLRVLGSYP
Sbjct: 388 SEVQEFTSFLRVLGSYP 404
Score = 25.0 bits (53), Expect(2) = 8e-65
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 203 GVTPLDMTPWTPSS 162
G P+DMT W+PSS
Sbjct: 401 GSYPMDMTSWSPSS 414
>ref|NP_197655.1| chorismate mutase/prephenate dehydratase-like protein; protein id:
At5g22630.1, supported by cDNA: gi_16604397, supported
by cDNA: gi_19699062 [Arabidopsis thaliana]
gi|10178237|dbj|BAB11669.1| chorismate mutase/prephenate
dehydratase-like protein [Arabidopsis thaliana]
gi|16604398|gb|AAL24205.1| AT5g22630/MDJ22_5
[Arabidopsis thaliana] gi|19699063|gb|AAL90899.1|
AT5g22630/MDJ22_5 [Arabidopsis thaliana]
gi|23506201|gb|AAN31112.1| At5g22630/MDJ22_5
[Arabidopsis thaliana]
Length = 425
Score = 234 bits (597), Expect(2) = 5e-61
Identities = 119/139 (85%), Positives = 128/139 (91%), Gaps = 2/139 (1%)
Frame = -2
Query: 603 SARAAELYGLQVMADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFA--HDKGTSVL 430
SARAAELYGLQ++ADGIQDD NVTRF+MLAR+PIIPRTDRPFKTSIVFA KGTSVL
Sbjct: 273 SARAAELYGLQILADGIQDDAGNVTRFLMLARDPIIPRTDRPFKTSIVFAAQEHKGTSVL 332
Query: 429 FKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQN 250
FKVLSAFAFRNISLTKIESRPH+N P+R+V D NVGT+KHFEY FYVDFEASMAE RAQN
Sbjct: 333 FKVLSAFAFRNISLTKIESRPHQNCPVRVVGDENVGTSKHFEYTFYVDFEASMAEARAQN 392
Query: 249 ALAEVQEFTSFLRVLGSYP 193
ALAEVQE+TSFLRVLGSYP
Sbjct: 393 ALAEVQEYTSFLRVLGSYP 411
Score = 22.3 bits (46), Expect(2) = 5e-61
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 203 GVTPLDMTPWT 171
G P+DMTPW+
Sbjct: 408 GSYPMDMTPWS 418
>ref|NP_190058.1| putative chloroplast prephenate dehydratase; protein id:
At3g44720.1, supported by cDNA: gi_17065231 [Arabidopsis
thaliana] gi|2392772|gb|AAB70035.1|AAB70035 putative
chloroplast prephenate dehydratase [Arabidopsis
thaliana] gi|17065232|gb|AAL32770.1| putative
chloroplast prephenate dehydratase [Arabidopsis
thaliana]
Length = 424
Score = 231 bits (588), Expect(2) = 1e-60
Identities = 117/139 (84%), Positives = 128/139 (91%), Gaps = 2/139 (1%)
Frame = -2
Query: 603 SARAAELYGLQVMADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFA--HDKGTSVL 430
SARAAELY LQ++ADGIQDDP NVTRF+MLAREPIIPRTDRPFKTSIVFA KGTSVL
Sbjct: 272 SARAAELYNLQILADGIQDDPGNVTRFLMLAREPIIPRTDRPFKTSIVFAAQEHKGTSVL 331
Query: 429 FKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQN 250
FKVLSAFAFR+ISLTKIESRPH NRP+R+V D + GT+K+FEY+FYVDFEASMAE RAQN
Sbjct: 332 FKVLSAFAFRDISLTKIESRPHHNRPLRVVGDGSFGTSKNFEYMFYVDFEASMAEPRAQN 391
Query: 249 ALAEVQEFTSFLRVLGSYP 193
ALAEVQE+TSFLRVLGSYP
Sbjct: 392 ALAEVQEYTSFLRVLGSYP 410
Score = 24.3 bits (51), Expect(2) = 1e-60
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = -3
Query: 203 GVTPLDMTPWTPSSRGE 153
G P+DMTPW+ +S E
Sbjct: 407 GSYPMDMTPWSMTSTEE 423
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,274,193
Number of Sequences: 1393205
Number of extensions: 13895531
Number of successful extensions: 110227
Number of sequences better than 10.0: 1157
Number of HSP's better than 10.0 without gapping: 63527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93347
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
