Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003880A_C01 KMC003880A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05313 hypothetical protein F26P21.170 - Arabidopsis thalia... 53 4e-06
ref|NP_565618.1| expressed protein; protein id: At2g26190.1, sup... 53 4e-06
ref|NP_200511.1| putative protein; protein id: At5g57010.1 [Arab... 49 7e-05
dbj|BAA97031.1| gb|AAC14530.1~gene_id:MHM17.13~strong similarity... 49 7e-05
dbj|BAC42905.1| unknown protein [Arabidopsis thaliana] 49 7e-05
>pir||T05313 hypothetical protein F26P21.170 - Arabidopsis thaliana
gi|3688186|emb|CAA21214.1| putative protein [Arabidopsis
thaliana] gi|7270252|emb|CAB80022.1| putative protein
[Arabidopsis thaliana]
Length = 488
Score = 52.8 bits (125), Expect = 4e-06
Identities = 22/24 (91%), Positives = 24/24 (99%)
Frame = -1
Query: 615 PSPRPSPKVRISPRLAYMGLPSPR 544
PSPRPSPKVR+SPRLAYMG+PSPR
Sbjct: 461 PSPRPSPKVRVSPRLAYMGIPSPR 484
>ref|NP_565618.1| expressed protein; protein id: At2g26190.1, supported by cDNA:
gi_16930468, supported by cDNA: gi_20453236 [Arabidopsis
thaliana] gi|25367179|pir||E84657 hypothetical protein
At2g26190 [imported] - Arabidopsis thaliana
gi|3075398|gb|AAC14530.1| expressed protein [Arabidopsis
thaliana] gi|16930469|gb|AAL31920.1|AF419588_1
At2g26190/T1D16.17 [Arabidopsis thaliana]
gi|20453237|gb|AAM19857.1| At2g26190/T1D16.17
[Arabidopsis thaliana] gi|22135809|gb|AAM91091.1|
At2g26190/T1D16.17 [Arabidopsis thaliana]
Length = 532
Score = 52.8 bits (125), Expect = 4e-06
Identities = 21/28 (75%), Positives = 26/28 (92%)
Frame = -1
Query: 615 PSPRPSPKVRISPRLAYMGLPSPRTPIS 532
PSPRPSP+VR+SPRLAYMG+PSPR ++
Sbjct: 504 PSPRPSPRVRVSPRLAYMGIPSPRVQVN 531
>ref|NP_200511.1| putative protein; protein id: At5g57010.1 [Arabidopsis thaliana]
Length = 495
Score = 48.5 bits (114), Expect = 7e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = -1
Query: 615 PSPRPSPKVRISPRLAYMGLPSPR 544
PSPRPSPK+R+SPRL+ MGLPSPR
Sbjct: 471 PSPRPSPKIRVSPRLSCMGLPSPR 494
>dbj|BAA97031.1| gb|AAC14530.1~gene_id:MHM17.13~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 458
Score = 48.5 bits (114), Expect = 7e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = -1
Query: 615 PSPRPSPKVRISPRLAYMGLPSPR 544
PSPRPSPK+R+SPRL+ MGLPSPR
Sbjct: 434 PSPRPSPKIRVSPRLSCMGLPSPR 457
>dbj|BAC42905.1| unknown protein [Arabidopsis thaliana]
Length = 87
Score = 48.5 bits (114), Expect = 7e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = -1
Query: 615 PSPRPSPKVRISPRLAYMGLPSPR 544
PSPRPSPK+R+SPRL+ MGLPSPR
Sbjct: 63 PSPRPSPKIRVSPRLSCMGLPSPR 86
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,609,253
Number of Sequences: 1393205
Number of extensions: 10475572
Number of successful extensions: 29382
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 26992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29049
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
