Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003868A_C01 KMC003868A_c01
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL14412.1| At1g12410/F5O11_7 [Arabidopsis thaliana] 141 8e-33
ref|NP_563907.1| ATP-dependent Clp protease proteolytic subunit ... 141 8e-33
ref|ZP_00074441.1| hypothetical protein [Trichodesmium erythraeu... 96 5e-19
ref|NP_519832.1| PROBABLE ATP-DEPENDENT PROTEASE (PROTEOLYTIC SU... 93 1e-18
ref|NP_391334.1| ATP-dependent Clp protease proteolytic subunit ... 85 6e-18
>gb|AAL14412.1| At1g12410/F5O11_7 [Arabidopsis thaliana]
Length = 279
Score = 141 bits (355), Expect = 8e-33
Identities = 71/96 (73%), Positives = 81/96 (83%)
Frame = -1
Query: 612 TMQSLQSPVATHSLGYAYNLAAFLLAAGLKGNRYAMPLSRIALQSPAGAARGQADDIQNE 433
TM+SL+SPV TH +G AYNLA FLLAAG KG+R+AMPLSRIALQSPAGAARGQADDIQNE
Sbjct: 150 TMKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQSPAGAARGQADDIQNE 209
Query: 432 ANELLRIRDYLFNELATKTGQPVEKITQDPEQDETF 325
A EL RIRDYLFNELA TGQP E++ +D + + F
Sbjct: 210 AKELSRIRDYLFNELAKNTGQPAERVFKDLSRVKRF 245
Score = 64.7 bits (156), Expect = 9e-10
Identities = 31/42 (73%), Positives = 37/42 (87%)
Frame = -2
Query: 359 RLPKTLSRMKRFNAQEALEYGLIDRIVRPPRIKADAPVKDGS 234
R+ K LSR+KRFNA+EA+EYGLID+IVRPPRIK DAP +D S
Sbjct: 234 RVFKDLSRVKRFNAEEAIEYGLIDKIVRPPRIKEDAPRQDES 275
>ref|NP_563907.1| ATP-dependent Clp protease proteolytic subunit (ClpR2); protein id:
At1g12410.1, supported by cDNA: gi_16209711, supported
by cDNA: gi_17065387, supported by cDNA: gi_20148624,
supported by cDNA: gi_5360588 [Arabidopsis thaliana]
gi|25453515|pir||T52454 ATP-dependent Clp proteinase (EC
3.4.21.-) catalytic chain P2 [imported] - Arabidopsis
thaliana gi|5360589|dbj|BAA82066.1| nClpP2 [Arabidopsis
thaliana] gi|8778627|gb|AAF79635.1|AC025416_9 F5O11.13
[Arabidopsis thaliana] gi|17065388|gb|AAL32848.1|
similar to nClpP2 [Arabidopsis thaliana]
gi|20148625|gb|AAM10203.1| similar to nClpP2
dbj|BAA82066.1 [Arabidopsis thaliana]
Length = 279
Score = 141 bits (355), Expect = 8e-33
Identities = 71/96 (73%), Positives = 81/96 (83%)
Frame = -1
Query: 612 TMQSLQSPVATHSLGYAYNLAAFLLAAGLKGNRYAMPLSRIALQSPAGAARGQADDIQNE 433
TM+SL+SPV TH +G AYNLA FLLAAG KG+R+AMPLSRIALQSPAGAARGQADDIQNE
Sbjct: 150 TMKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQSPAGAARGQADDIQNE 209
Query: 432 ANELLRIRDYLFNELATKTGQPVEKITQDPEQDETF 325
A EL RIRDYLFNELA TGQP E++ +D + + F
Sbjct: 210 AKELSRIRDYLFNELAKNTGQPAERVFKDLSRVKRF 245
Score = 64.7 bits (156), Expect = 9e-10
Identities = 31/42 (73%), Positives = 37/42 (87%)
Frame = -2
Query: 359 RLPKTLSRMKRFNAQEALEYGLIDRIVRPPRIKADAPVKDGS 234
R+ K LSR+KRFNA+EA+EYGLID+IVRPPRIK DAP +D S
Sbjct: 234 RVFKDLSRVKRFNAEEAIEYGLIDKIVRPPRIKEDAPRQDES 275
>ref|ZP_00074441.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 196
Score = 95.5 bits (236), Expect = 5e-19
Identities = 49/93 (52%), Positives = 65/93 (69%)
Frame = -1
Query: 612 TMQSLQSPVATHSLGYAYNLAAFLLAAGLKGNRYAMPLSRIALQSPAGAARGQADDIQNE 433
TMQ +++ V T LG A ++ +FLLAAG KG R A+P SRI + P G RGQA DI+ E
Sbjct: 83 TMQYIKADVITICLGLAASMGSFLLAAGTKGKRLALPNSRIMIHQPMGGTRGQATDIEIE 142
Query: 432 ANELLRIRDYLFNELATKTGQPVEKITQDPEQD 334
ANE+LR+R L N LA +TGQ +EKI +D ++D
Sbjct: 143 ANEILRVRSELNNMLAERTGQSLEKIEKDTDRD 175
>ref|NP_519832.1| PROBABLE ATP-DEPENDENT PROTEASE (PROTEOLYTIC SUBUNIT) TRANSMEMBRANE
PROTEIN [Ralstonia solanacearum]
gi|22653696|sp|Q8XYP7|CLPP_RALSO ATP-dependent Clp
protease proteolytic subunit (Endopeptidase Clp)
gi|17428728|emb|CAD15413.1| PROBABLE ATP-DEPENDENT
PROTEASE (PROTEOLYTIC SUBUNIT) TRANSMEMBRANE PROTEIN
[Ralstonia solanacearum]
Length = 217
Score = 92.8 bits (229), Expect(2) = 1e-18
Identities = 47/93 (50%), Positives = 65/93 (69%)
Frame = -1
Query: 612 TMQSLQSPVATHSLGYAYNLAAFLLAAGLKGNRYAMPLSRIALQSPAGAARGQADDIQNE 433
TMQ ++ V+T +G A ++ AFLLAAG KG RYA+P SRI + P G ARGQA DI+ +
Sbjct: 102 TMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMIHQPLGGARGQASDIEIQ 161
Query: 432 ANELLRIRDYLFNELATKTGQPVEKITQDPEQD 334
A E+L +R+ L L+ TGQPV+KI +D ++D
Sbjct: 162 AREILYLRERLNTILSEVTGQPVDKIARDTDRD 194
Score = 21.9 bits (45), Expect(2) = 1e-18
Identities = 8/27 (29%), Positives = 16/27 (58%)
Frame = -2
Query: 359 RLPKTLSRMKRFNAQEALEYGLIDRIV 279
++ + R + +A EYGLID+++
Sbjct: 186 KIARDTDRDNFMSGDQAKEYGLIDKVL 212
>ref|NP_391334.1| ATP-dependent Clp protease proteolytic subunit (class III
heat-shock protein) [Bacillus subtilis]
gi|3287962|sp|P80244|CLPP_BACSU ATP-dependent Clp
protease proteolytic subunit (Endopeptidase Clp)
(Caseinolytic protease) (Stress protein G7)
gi|7435692|pir||B69601 endopeptidase Clp (EC 3.4.21.92)
chain P [similarity] - Bacillus subtilis
gi|1945673|emb|CAB08043.1| hypothetical protein
[Bacillus subtilis] gi|2635967|emb|CAB15459.1|
ATP-dependent Clp protease proteolytic subunit (class
III heat-shock protein) [Bacillus subtilis subsp.
subtilis str. 168] gi|2668494|gb|AAC46381.1| ClpP
[Bacillus subtilis]
Length = 197
Score = 85.1 bits (209), Expect(2) = 6e-18
Identities = 43/93 (46%), Positives = 62/93 (66%)
Frame = -1
Query: 612 TMQSLQSPVATHSLGYAYNLAAFLLAAGLKGNRYAMPLSRIALQSPAGAARGQADDIQNE 433
TMQ ++ V+T +G A ++ AFLLAAG KG RYA+P S + + P G A+GQA +I+
Sbjct: 80 TMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIA 139
Query: 432 ANELLRIRDYLFNELATKTGQPVEKITQDPEQD 334
A +L +RD L LA +TGQP+E I +D ++D
Sbjct: 140 AKRILLLRDKLNKVLAERTGQPLEVIERDTDRD 172
Score = 27.3 bits (59), Expect(2) = 6e-18
Identities = 11/15 (73%), Positives = 15/15 (99%)
Frame = -2
Query: 323 NAQEALEYGLIDRIV 279
+A+EALEYGLID+I+
Sbjct: 176 SAEEALEYGLIDKIL 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,172,695
Number of Sequences: 1393205
Number of extensions: 11038639
Number of successful extensions: 30475
Number of sequences better than 10.0: 276
Number of HSP's better than 10.0 without gapping: 29524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30428
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
