Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003864A_C01 KMC003864A_c01
(468 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P14922|SSN6_YEAST GLUCOSE REPRESSION MEDIATOR PROTEIN gi|1713... 40 0.016
ref|NP_009670.1| General repressor of transcription (with Tup1p)... 40 0.016
pir||S49915 extensin-like protein - maize gi|600118|emb|CAA84230... 38 0.059
gb|AAO52603.1| similar to Dictyostelium discoideum (Slime mold).... 38 0.059
ref|NP_360546.1| similarity to WASP, N-WASP, MENA proteins [Rick... 38 0.059
>sp|P14922|SSN6_YEAST GLUCOSE REPRESSION MEDIATOR PROTEIN gi|171350|gb|AAA34545.1| CYC8
protein gi|172726|gb|AAA35103.1| SSN6 protein
Length = 966
Score = 39.7 bits (91), Expect = 0.016
Identities = 28/86 (32%), Positives = 39/86 (44%), Gaps = 1/86 (1%)
Frame = +3
Query: 207 NHKALLVKIPPKYTSSSTKRDKKQKAPVLCNKKSMKPMSQLPPA-AVAALLATQEGRVIP 383
N K+ + P S+T +++ PV N +Q PP A A AT+ V P
Sbjct: 759 NAKSEVSNQSPAVVESNTNNTSQEEKPVKANSIPSVIGAQEPPQEASPAEEATKAASVSP 818
Query: 384 PPPPTNGSPEQSSVVPTTADPVSSSK 461
P N PE SSV PT + S++K
Sbjct: 819 STKPLNTEPESSSVQPTVSSESSTTK 844
>ref|NP_009670.1| General repressor of transcription (with Tup1p); mediates glucose
repression; Cyc8p [Saccharomyces cerevisiae]
gi|283218|pir||S25365 CYC8 protein - yeast (Saccharomyces
cerevisiae) gi|3550|emb|CAA46973.1| nuclear
phosphoprotein [Saccharomyces cerevisiae]
gi|476068|emb|CAA55615.1| glucose repression mediator
protein [Saccharomyces cerevisiae]
gi|536450|emb|CAA85069.1| ORF YBR112c [Saccharomyces
cerevisiae]
Length = 966
Score = 39.7 bits (91), Expect = 0.016
Identities = 28/86 (32%), Positives = 39/86 (44%), Gaps = 1/86 (1%)
Frame = +3
Query: 207 NHKALLVKIPPKYTSSSTKRDKKQKAPVLCNKKSMKPMSQLPPA-AVAALLATQEGRVIP 383
N K+ + P S+T +++ PV N +Q PP A A AT+ V P
Sbjct: 759 NAKSEVSNQSPAVVESNTNNTSQEEKPVKANSIPSVIGAQEPPQEASPAEEATKAASVSP 818
Query: 384 PPPPTNGSPEQSSVVPTTADPVSSSK 461
P N PE SSV PT + S++K
Sbjct: 819 STKPLNTEPESSSVQPTVSSESSTTK 844
>pir||S49915 extensin-like protein - maize gi|600118|emb|CAA84230.1| extensin-like
protein [Zea mays] gi|1096557|prf||2111476A extensin-like
domain
Length = 1188
Score = 37.7 bits (86), Expect = 0.059
Identities = 29/79 (36%), Positives = 35/79 (43%), Gaps = 1/79 (1%)
Frame = +3
Query: 234 PPKYTSSSTKRDKKQKAPVLCNKKSMKPMSQLPPAAVAALLATQEGRVIPPPPPTN-GSP 410
PP SS K PV+ + S PPA V++ AT + PPP P N P
Sbjct: 917 PPAMVSSPPMTPKSSPPPVVVSSPPPTVKSSPPPAPVSSPPATPKSS--PPPAPVNLPPP 974
Query: 411 EQSSVVPTTADPVSSSKPS 467
E S P T PVSS P+
Sbjct: 975 EVKSSPPPT--PVSSPPPA 991
Score = 32.3 bits (72), Expect = 2.5
Identities = 22/78 (28%), Positives = 28/78 (35%)
Frame = +3
Query: 234 PPKYTSSSTKRDKKQKAPVLCNKKSMKPMSQLPPAAVAALLATQEGRVIPPPPPTNGSPE 413
PP S K P + + M P S PP V++ PPP SP
Sbjct: 901 PPTPVSLPPPIVKSSPPPAMVSSPPMTPKSSPPPVVVSS-----------PPPTVKSSPP 949
Query: 414 QSSVVPTTADPVSSSKPS 467
+ V A P SS P+
Sbjct: 950 PAPVSSPPATPKSSPPPA 967
Score = 32.0 bits (71), Expect = 3.3
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +3
Query: 234 PPKYTSSSTKRDKKQKAPVLCNKKSMKPMSQLPPAAVAALLATQEGRVIPPPPPTNGSPE 413
PP + ST ++ P K S P LPP + QE P PP T P
Sbjct: 656 PPPPPAKSTPPPEEYPTPPTSVKSSPPPEKSLPPPTLIPSPPPQEK---PTPPSTPSKPP 712
Query: 414 QSSVVPT-TADPVSS 455
S P+ +PVSS
Sbjct: 713 SSPEKPSPPKEPVSS 727
Score = 30.4 bits (67), Expect = 9.5
Identities = 22/77 (28%), Positives = 27/77 (34%)
Frame = +3
Query: 234 PPKYTSSSTKRDKKQKAPVLCNKKSMKPMSQLPPAAVAALLATQEGRVIPPPPPTNGSPE 413
PP SS K P N + S PP V++ + PPP P + P
Sbjct: 949 PPAPVSSPPATPKSSPPPAPVNLPPPEVKSSPPPTPVSS--PPPAPKSSPPPAPMSSPPP 1006
Query: 414 QSSVVPTTADPVSSSKP 464
P PVSS P
Sbjct: 1007 PEVKSPPPPAPVSSPPP 1023
>gb|AAO52603.1| similar to Dictyostelium discoideum (Slime mold). Wiscott-aldrich
syndrome protein
Length = 583
Score = 37.7 bits (86), Expect = 0.059
Identities = 23/77 (29%), Positives = 37/77 (47%)
Frame = +3
Query: 231 IPPKYTSSSTKRDKKQKAPVLCNKKSMKPMSQLPPAAVAALLATQEGRVIPPPPPTNGSP 410
+PP + S + ++ P+ N SM P PP+A +L ++PPPPP P
Sbjct: 444 LPP---APSIQSPIEKPTPISLNNSSMVPPPPPPPSAPISL---NNSSMVPPPPPAISKP 497
Query: 411 EQSSVVPTTADPVSSSK 461
+S PT+ P+ S +
Sbjct: 498 --TSAPPTSMPPLDSGR 512
>ref|NP_360546.1| similarity to WASP, N-WASP, MENA proteins [Rickettsia conorii]
gi|25503332|pir||E97813 WASP, N-WASP, MENA proteins
homolog [imported] - Rickettsia conorii (strain Malish
7) gi|15620016|gb|AAL03447.1| similarity to WASP,
N-WASP, MENA proteins [Rickettsia conorii]
Length = 520
Score = 37.7 bits (86), Expect = 0.059
Identities = 25/87 (28%), Positives = 38/87 (42%), Gaps = 7/87 (8%)
Frame = +3
Query: 207 NHKALLVKIPP-----KYTSSSTKRDKKQKAPVLCNKKSMKPMSQ--LPPAAVAALLATQ 365
N K ++ K+P K S+ T QK P+L N KP+ PP+ +
Sbjct: 274 NIKDIIAKLPDNEKLQKIVSNLTNHMASQKEPILANASLAKPLENNITPPSPLP------ 327
Query: 366 EGRVIPPPPPTNGSPEQSSVVPTTADP 446
E + PPPP SP + +P++ P
Sbjct: 328 ENNIPSPPPPPPPSPLPENNIPSSPPP 354
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 390,175,638
Number of Sequences: 1393205
Number of extensions: 8287191
Number of successful extensions: 56894
Number of sequences better than 10.0: 352
Number of HSP's better than 10.0 without gapping: 42495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53760
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
