Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003853A_C01 KMC003853A_c01
(774 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P49972|SR52_LYCES SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 2... 197 2e-57
pir||G96526 hypothetical protein F27K7.8 [imported] - Arabidopsi... 201 3e-55
ref|NP_564535.1| signal recognition particle 54 kDa protein 2 (S... 201 3e-55
gb|AAA66200.1| signal recognition particle 54 kDa subunit 199 2e-54
pir||S51597 signal recognition particle 54K protein - tomato (cv... 183 2e-49
>sp|P49972|SR52_LYCES SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 2 (SRP54)
gi|1076577|pir||S51598 signal recognition particle 54K
protein - tomato (cv. UC82-B) gi|556902|emb|CAA84288.1|
54-kD signal recognition particle (SRP) specific protein
[Lycopersicon esculentum]
Length = 499
Score = 197 bits (500), Expect(2) = 2e-57
Identities = 96/105 (91%), Positives = 103/105 (97%)
Frame = -2
Query: 773 KIKRYMTMMDSMTNEELDSSNPKMMNESRMMRVARGSGRQVREVMEMMEEYKRLAKIWSK 594
KIKRYMTMMDSMTNEELDSSNPK+M +SR+MR+ARGSGRQV EVM+MMEEYKRLAKIWSK
Sbjct: 372 KIKRYMTMMDSMTNEELDSSNPKLMTDSRIMRIARGSGRQVHEVMDMMEEYKRLAKIWSK 431
Query: 593 MKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSL 459
MKGLKIPKKG+MSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQ+L
Sbjct: 432 MKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNL 476
Score = 48.1 bits (113), Expect(2) = 2e-57
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -3
Query: 460 LMKQMGSGKDMMGGMGGMFGGG 395
LMKQMGS KDMMGGMGGMFGGG
Sbjct: 476 LMKQMGSAKDMMGGMGGMFGGG 497
>pir||G96526 hypothetical protein F27K7.8 [imported] - Arabidopsis thaliana
gi|11094805|gb|AAG29734.1|AC084414_2 signal recognition
particle 54 kDa protein 2 (SRP54), putative [Arabidopsis
thaliana]
Length = 522
Score = 201 bits (511), Expect(2) = 3e-55
Identities = 99/105 (94%), Positives = 103/105 (97%)
Frame = -2
Query: 773 KIKRYMTMMDSMTNEELDSSNPKMMNESRMMRVARGSGRQVREVMEMMEEYKRLAKIWSK 594
KIKRYMTMMDSMTN+ELDSSNPK+ NESRMMR+ARGSGRQVREVMEM+EEYKRLAKIWSK
Sbjct: 399 KIKRYMTMMDSMTNDELDSSNPKVFNESRMMRIARGSGRQVREVMEMLEEYKRLAKIWSK 458
Query: 593 MKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSL 459
MKGLKIPK GDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSL
Sbjct: 459 MKGLKIPKNGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSL 503
Score = 36.6 bits (83), Expect(2) = 3e-55
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -3
Query: 466 KALMKQMGSGKDMMGGMGGMFGGG 395
++LMKQMGSGKDMM GMFGGG
Sbjct: 501 QSLMKQMGSGKDMM----GMFGGG 520
>ref|NP_564535.1| signal recognition particle 54 kDa protein 2 (SRP54), putative;
protein id: At1g48900.1, supported by cDNA: gi_15450460,
supported by cDNA: gi_15810009, supported by cDNA:
gi_17386101 [Arabidopsis thaliana]
gi|21542461|sp|P49967|SR53_ARATH Signal recognition
particle 54 kDa protein 3 (SRP54)
gi|15450461|gb|AAK96524.1| At1g48900/F27K7_8
[Arabidopsis thaliana] gi|15810010|gb|AAL06932.1|
At1g48900/F27K7_8 [Arabidopsis thaliana]
gi|17386102|gb|AAL38597.1|AF446864_1 At1g48900/F27K7_8
[Arabidopsis thaliana]
Length = 495
Score = 201 bits (511), Expect(2) = 3e-55
Identities = 99/105 (94%), Positives = 103/105 (97%)
Frame = -2
Query: 773 KIKRYMTMMDSMTNEELDSSNPKMMNESRMMRVARGSGRQVREVMEMMEEYKRLAKIWSK 594
KIKRYMTMMDSMTN+ELDSSNPK+ NESRMMR+ARGSGRQVREVMEM+EEYKRLAKIWSK
Sbjct: 372 KIKRYMTMMDSMTNDELDSSNPKVFNESRMMRIARGSGRQVREVMEMLEEYKRLAKIWSK 431
Query: 593 MKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSL 459
MKGLKIPK GDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSL
Sbjct: 432 MKGLKIPKNGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSL 476
Score = 36.6 bits (83), Expect(2) = 3e-55
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -3
Query: 466 KALMKQMGSGKDMMGGMGGMFGGG 395
++LMKQMGSGKDMM GMFGGG
Sbjct: 474 QSLMKQMGSGKDMM----GMFGGG 493
>gb|AAA66200.1| signal recognition particle 54 kDa subunit
Length = 495
Score = 199 bits (505), Expect(2) = 2e-54
Identities = 98/105 (93%), Positives = 102/105 (96%)
Frame = -2
Query: 773 KIKRYMTMMDSMTNEELDSSNPKMMNESRMMRVARGSGRQVREVMEMMEEYKRLAKIWSK 594
KIKRYMTMMDSMTN+ELDSS PK+ NESRMMR+ARGSGRQVREVMEM+EEYKRLAKIWSK
Sbjct: 372 KIKRYMTMMDSMTNDELDSSGPKVFNESRMMRIARGSGRQVREVMEMLEEYKRLAKIWSK 431
Query: 593 MKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSL 459
MKGLKIPK GDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSL
Sbjct: 432 MKGLKIPKNGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSL 476
Score = 36.6 bits (83), Expect(2) = 2e-54
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -3
Query: 466 KALMKQMGSGKDMMGGMGGMFGGG 395
++LMKQMGSGKDMM GMFGGG
Sbjct: 474 QSLMKQMGSGKDMM----GMFGGG 493
>pir||S51597 signal recognition particle 54K protein - tomato (cv. Rentita)
Length = 496
Score = 183 bits (464), Expect(2) = 2e-49
Identities = 90/105 (85%), Positives = 101/105 (95%)
Frame = -2
Query: 773 KIKRYMTMMDSMTNEELDSSNPKMMNESRMMRVARGSGRQVREVMEMMEEYKRLAKIWSK 594
K KRYMTMMDSMT+EELDS+NPK++ ESR+MR+ARGSGR V EVMEM+EEYKRLAKI+SK
Sbjct: 372 KFKRYMTMMDSMTDEELDSTNPKILTESRIMRIARGSGRLVHEVMEMLEEYKRLAKIFSK 431
Query: 593 MKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSL 459
MKGLKIPKKGDMS+LSRNMNAQ+MSKVLPPQMLKQIGGMGGLQ+L
Sbjct: 432 MKGLKIPKKGDMSSLSRNMNAQNMSKVLPPQMLKQIGGMGGLQNL 476
Score = 35.8 bits (81), Expect(2) = 2e-49
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = -3
Query: 460 LMKQMGSGKDMMGGMGGMFGGGG 392
LMKQMGS KDMM GMFGGGG
Sbjct: 476 LMKQMGSAKDMM----GMFGGGG 494
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 673,795,145
Number of Sequences: 1393205
Number of extensions: 15466764
Number of successful extensions: 74025
Number of sequences better than 10.0: 217
Number of HSP's better than 10.0 without gapping: 48963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68917
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38095156112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
