Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003851A_C01 KMC003851A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565703.1| WRKY family transcription factor; protein id: A... 166 2e-40
ref|NP_198217.1| WRKY family transcription factor; protein id: A... 159 2e-38
gb|AAL29432.1|AF426255_1 WRKY transcription factor 74 [Arabidops... 159 2e-38
ref|NP_566236.1| WRKY family transcription factor; protein id: A... 159 3e-38
gb|AAG42147.1| somatic embryogenesis related protein [Dactylis g... 155 3e-37
>ref|NP_565703.1| WRKY family transcription factor; protein id: At2g30590.1,
supported by cDNA: gi_13507098 [Arabidopsis thaliana]
gi|20978769|sp|O04336|WR21_ARATH Probable WRKY
transcription factor 21 (WRKY DNA-binding protein 21)
gi|25408091|pir||C84710 hypothetical protein At2g30590
[imported] - Arabidopsis thaliana
gi|1946360|gb|AAB63078.1| expressed protein [Arabidopsis
thaliana] gi|13507099|gb|AAK28441.1|AF272747_1 WRKY
DNA-binding protein 21 [Arabidopsis thaliana]
gi|22531205|gb|AAM97106.1| expressed protein
[Arabidopsis thaliana] gi|23198046|gb|AAN15550.1|
expressed protein [Arabidopsis thaliana]
Length = 380
Score = 166 bits (421), Expect = 2e-40
Identities = 72/83 (86%), Positives = 81/83 (96%)
Frame = -3
Query: 585 RVKRSIKVPAISNKLANIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERC 406
RV+RSI+VPAISNK+A+IPPDDYSWRKYGQKPIKGSP+PRGYYKCSSMRGCPARKHVERC
Sbjct: 294 RVRRSIRVPAISNKVADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERC 353
Query: 405 LEEPTMLLVTYEGEHNHPKIPTQ 337
LE+P ML+VTYE EHNHPK+P+Q
Sbjct: 354 LEDPAMLIVTYEAEHNHPKLPSQ 376
>ref|NP_198217.1| WRKY family transcription factor; protein id: At5g28650.1,
supported by cDNA: gi_16798367, supported by cDNA:
gi_17064167 [Arabidopsis thaliana]
gi|17064168|gb|AAL35291.1|AF442398_1 WRKY transcription
factor 74 [Arabidopsis thaliana]
Length = 330
Score = 159 bits (403), Expect = 2e-38
Identities = 70/80 (87%), Positives = 78/80 (97%)
Frame = -3
Query: 585 RVKRSIKVPAISNKLANIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERC 406
RVKRSIKVPAISNK+A+IPPD+YSWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC
Sbjct: 243 RVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERC 302
Query: 405 LEEPTMLLVTYEGEHNHPKI 346
+EE +ML+VTYEGEHNH +I
Sbjct: 303 VEETSMLIVTYEGEHNHSRI 322
>gb|AAL29432.1|AF426255_1 WRKY transcription factor 74 [Arabidopsis thaliana]
Length = 330
Score = 159 bits (403), Expect = 2e-38
Identities = 70/80 (87%), Positives = 78/80 (97%)
Frame = -3
Query: 585 RVKRSIKVPAISNKLANIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERC 406
RVKRSIKVPAISNK+A+IPPD+YSWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC
Sbjct: 243 RVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERC 302
Query: 405 LEEPTMLLVTYEGEHNHPKI 346
+EE +ML+VTYEGEHNH +I
Sbjct: 303 VEETSMLIVTYEGEHNHSRI 322
>ref|NP_566236.1| WRKY family transcription factor; protein id: At3g04670.1,
supported by cDNA: gi_15384222, supported by cDNA:
gi_15450756 [Arabidopsis thaliana]
gi|20978793|sp|Q9SR07|WR39_ARATH Probable WRKY
transcription factor 39 (WRKY DNA-binding protein 39)
gi|6175187|gb|AAF04913.1|AC011437_28 unknown protein
[Arabidopsis thaliana]
gi|15384223|gb|AAK96198.1|AF404860_1 WRKY transcription
factor 39 [Arabidopsis thaliana]
gi|15450757|gb|AAK96650.1| AT3g04670/F7O18_30
[Arabidopsis thaliana] gi|22137142|gb|AAM91416.1|
AT3g04670/F7O18_30 [Arabidopsis thaliana]
Length = 330
Score = 159 bits (401), Expect = 3e-38
Identities = 69/80 (86%), Positives = 78/80 (97%)
Frame = -3
Query: 585 RVKRSIKVPAISNKLANIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERC 406
RVKRSIKVPAISNK+A+IPPD+YSWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC
Sbjct: 243 RVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERC 302
Query: 405 LEEPTMLLVTYEGEHNHPKI 346
++E +ML+VTYEGEHNH +I
Sbjct: 303 IDETSMLIVTYEGEHNHSRI 322
>gb|AAG42147.1| somatic embryogenesis related protein [Dactylis glomerata]
Length = 386
Score = 155 bits (393), Expect = 3e-37
Identities = 66/85 (77%), Positives = 79/85 (92%)
Frame = -3
Query: 585 RVKRSIKVPAISNKLANIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERC 406
R++RSIKVPAISNK+A+IP D++SWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC
Sbjct: 302 RIRRSIKVPAISNKVADIPADEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERC 361
Query: 405 LEEPTMLLVTYEGEHNHPKIPTQPA 331
+++P ML+VTYEG+HNH + QPA
Sbjct: 362 VDDPAMLIVTYEGDHNHNRAAAQPA 386
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,807,702
Number of Sequences: 1393205
Number of extensions: 10759164
Number of successful extensions: 22703
Number of sequences better than 10.0: 234
Number of HSP's better than 10.0 without gapping: 21910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22515
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
