Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003848A_C01 KMC003848A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_703278.1| patched family protein, putative [Plasmodium fa... 33 1.9
ref|NP_518275.1| TRANSPORT TRANSMEMBRANE PROTEIN [Ralstonia sola... 32 7.4
ref|NP_625502.1| conserved hypothetical protein [Streptomyces co... 32 7.4
>ref|NP_703278.1| patched family protein, putative [Plasmodium falciparum 3D7]
gi|23510650|emb|CAD49035.1| patched family protein,
putative [Plasmodium falciparum 3D7]
Length = 1470
Score = 33.5 bits (75), Expect = 1.9
Identities = 23/56 (41%), Positives = 29/56 (51%)
Frame = -3
Query: 567 WFLSPSVSFSFFHSMQYNSAFMEILSFVL*FSS*FSSIGLPVLTGDYSANLSEIGP 400
WF+ +S FF + + F + LS VL FS FSS+ LPVL LS GP
Sbjct: 1423 WFV---ISTLFFSNKDFTVIFFQTLSLVLFFSITFSSMFLPVL-------LSSFGP 1468
>ref|NP_518275.1| TRANSPORT TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
gi|17427162|emb|CAD13682.1| TRANSPORT TRANSMEMBRANE
PROTEIN [Ralstonia solanacearum]
Length = 426
Score = 31.6 bits (70), Expect = 7.4
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 293 ILLAGLLKLLSLPTLWTEEQIPDPSPGEISSSDSTLGPISDRFA 424
+L+AGL+ L L TLW+ E P S ++ +GP+ D FA
Sbjct: 179 LLMAGLMALFVLATLWSPEPEAAARPPR-SLQEAVVGPLRDFFA 221
>ref|NP_625502.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
gi|9716197|emb|CAC01495.1| conserved hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 242
Score = 31.6 bits (70), Expect = 7.4
Identities = 15/49 (30%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Frame = -3
Query: 456 IGLPVLTG-DYSANLSEIGPNVESLDEISPGDGSGICSSVQSVGSDSSF 313
+GLP LTG + ++ +GPN L ++ G+G+G + +D+ F
Sbjct: 142 LGLPPLTGFENHQGVTHVGPNARPLAQVRFGNGNGTGDGTEGAYNDTVF 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,242,919
Number of Sequences: 1393205
Number of extensions: 9708134
Number of successful extensions: 22487
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22481
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
